Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,185,049 – 19,185,151 |
Length | 102 |
Max. P | 0.806524 |
Location | 19,185,049 – 19,185,151 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 81.02 |
Mean single sequence MFE | -18.20 |
Consensus MFE | -15.14 |
Energy contribution | -14.70 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.31 |
Mean z-score | -1.62 |
Structure conservation index | 0.83 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19185049 102 + 22407834 CCCGCCAUAAACACG-----UUAACUUUUCAUUUGUACACUCUUCACCCGAACACAUCUCGUCCAGCUUUGGGCAAGCCCAACACUGUUGUUUGUCACUCGCUGCUU ...((.(((((((..-----............................(((.......)))..(((..(((((....)))))..))).))))))).....))..... ( -14.50) >DroSec_CAF1 5039 102 + 1 CCCGCCAUGAACACC-----UUAACUUUUCAUUUGUACACUCUUCACCCGCACACAUCUCGUCCAGCUUUGGGCAAGCCCAACACUGUGGUUUGCCACUCGCUGCUU ...((..((((....-----...((.........))......))))...))............((((....((((((((((....)).))))))))....))))... ( -20.62) >DroSim_CAF1 6353 102 + 1 CCCGCCAUGAACACC-----UUAACUUUUCAUUUGUACACUCUUCACCCCCACACAUCUCGUCCAGCUUUGGGCAAGCCCAACACUGUGGUUUGCCACUCGCUGCUU ...((.(((((....-----.......)))))..))...........................((((....((((((((((....)).))))))))....))))... ( -19.80) >DroEre_CAF1 5320 100 + 1 CCCAUCAUAAACACC-----AUAACUUUUCAUUUGCACACUCUUCACCC--ACACAUAUCGUCCAGCUUUGGGCAAGCCCCACACUGUGGUUUGCCACUCGCUGCUU ...............-----.............................--............((((....((((((((.(.....).))))))))....))))... ( -18.90) >DroYak_CAF1 6177 99 + 1 CCGAUCGUAAACAC------UUAACUUUUCAUUUGCACACUCUUCACCC--ACACAUGUUGUCCAGCAUUGGGCAAGCCCCACACUGUGGUUUGCCACUCGCUGCUU ......(((((...------...........))))).............--............((((....((((((((.(.....).))))))))....))))... ( -19.44) >DroMoj_CAF1 20642 96 + 1 ---GACA--CUUAGCUUAACACA--UUUUCAUUUGCACAUUG-UCAUCC---AACACCCGGUCUAGCACUGGGCAAGCCUCCCACCAUCGUUUGUCACUCGUUGCUU ---((((--....((........--.........))....))-))...(---(((.((((((.....))))))(((((...........)))))......))))... ( -15.93) >consensus CCCGCCAUAAACACC_____UUAACUUUUCAUUUGCACACUCUUCACCC__ACACAUCUCGUCCAGCUUUGGGCAAGCCCAACACUGUGGUUUGCCACUCGCUGCUU ...............................................................((((....(((((((((......).))))))))....))))... (-15.14 = -14.70 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:24 2006