Locus 6854

Sequence ID 2L_DroMel_CAF1
Location 19,182,031 – 19,182,127
Length 96
Max. P 0.700132
window10928

overview

Window 8

Location 19,182,031 – 19,182,127
Length 96
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 74.17
Mean single sequence MFE -26.15
Consensus MFE -17.12
Energy contribution -16.93
Covariance contribution -0.19
Combinations/Pair 1.24
Mean z-score -1.21
Structure conservation index 0.65
SVM decision value 0.35
SVM RNA-class probability 0.700132
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19182031 96 + 22407834
---GUA----------CAAA-UAUUGAAUAAAAAAUAAAAAUGCUGCGGCAGGAGAACUUGGCAGCCAACUUCUGCGGUCUCCUGGCCAGCCAGGGCUAUAAAGGUGAGU
---.((----------(...-((((........)))).....((((.(.(((((((.((..((((.......))))))))))))).))))).............)))... ( -24.30)
>DroPse_CAF1 1826 109 + 1
GCUGCACAAAAAAUGAAAAGUUUUUAAAUAAAAAUCA-CAAUGCUGCGUCAGGAGAACUUGGCCGCCAACUUCUGUGGCCUUCUGGCCAGCCAGGGACACACAGGCAAGU
(((.....((((((.....)))))).........((.-(...((((.(((((((......((((((........)))))))))))))))))...)))......))).... ( -27.40)
>DroSim_CAF1 2758 96 + 1
---GUA----------CAAA-UAUUGAAUAAAAAUCAAAAAUGCUGCGGCAGGAGAACUUGGCGGCCAACUUCUGCGGUCUCCUGGCCAGCCAGGGCUAUAAAGGUAAGU
---...----------....-..((((.......))))...((((((.(((((((...((((...))))))))))).)).((((((....)))))).......))))... ( -24.80)
>DroWil_CAF1 81552 107 + 1
UCUGCA--GAAAAUGAGAAAUUGUUGAAUUAGAAUUA-AAAUGCUGCGCCAAGAAAACUUGGCAGCUAAUUUCUGCGGCCUAUUGGCAACCCAGGGACACAAGGGUAAGU
..((((--(((((..(....)..))............-....(((..((((((....)))))))))....)))))))(((....))).((((..(....)..)))).... ( -31.30)
>DroAna_CAF1 44619 96 + 1
---UUG----------AAAG-UUUUUAUCAAAAAAACGAAAUGCUGCGCCAGGAAAACUUGGCCGCCAACUUCUGUGGUCUGCUCGCCACCCAGGGAUACAAAGGUAAUA
---...----------...(-(((((.....))))))....((((((((((((....))))).)))...(((..(((((......)))))..)))........))))... ( -21.70)
>DroPer_CAF1 2092 109 + 1
GCUGCACAAAAAAUGAAAAGUUUUUAAAUAAAAAUCA-CAAUGCUGCGUCAGGAGAACUUGGCCGCCAACUUCUGUGGCCUUCUGGCCAGCCAGGGACACACAGGCAAGU
(((.....((((((.....)))))).........((.-(...((((.(((((((......((((((........)))))))))))))))))...)))......))).... ( -27.40)
>consensus
___GCA__________AAAA_UUUUGAAUAAAAAUCA_AAAUGCUGCGCCAGGAGAACUUGGCCGCCAACUUCUGCGGCCUCCUGGCCAGCCAGGGACACAAAGGUAAGU
.........................................((((((((((((....)))))).))....(((((.((((....))))...))))).......))))... (-17.12 = -16.93 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:22 2006