Locus 6853

Sequence ID 2L_DroMel_CAF1
Location 19,181,216 – 19,181,311
Length 95
Max. P 0.926501
window10927

overview

Window 7

Location 19,181,216 – 19,181,311
Length 95
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 64.50
Mean single sequence MFE -24.08
Consensus MFE -8.62
Energy contribution -8.32
Covariance contribution -0.30
Combinations/Pair 1.41
Mean z-score -2.14
Structure conservation index 0.36
SVM decision value 1.18
SVM RNA-class probability 0.926501
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19181216 95 - 22407834
GACUUAGAGCCCAGAGUCAUUAACAACAUCAUGACCUCUCCGUACUCCAAGGUCAGUGCGGAAACUGGUC------UUAUUGGAUCGGA---UUCUG---AUCUAAU
...(((((...(((((((.....(((......((((..((((((((........))))))))....))))------...))).....))---)))))---.))))). ( -29.70)
>DroGri_CAF1 14926 86 - 1
GAUCUGGAGCCACGCGUCAUACACAACAUUAUGAGCUCGCCCUAUUCCAAGGUAAG--------CUGGAGAUUCCA-CAAUAAAUAUAU---AUCUG---G------
....((((.(((....(((((........)))))(((..((.........))..))--------))))....))))-............---.....---.------ ( -14.20)
>DroSec_CAF1 1229 95 - 1
GACUUGGAGCCCAGGGUCAUUAACAACAUCAUGACCUCUCCGUACUCCAAGGUCAGUGCGGAAACUGGUC------UUCUUAGAUCGGA---CUCUG---AUCUUUU
.....((((.((((((((((..........))))))..((((((((........))))))))..)))).)------)))..(((((((.---..)))---))))... ( -32.70)
>DroSim_CAF1 1968 85 - 1
GACUUGGAACCCAGGGUCAUUAACAACAUCAUGACCUCUCCGUACUCCAAGGUCAGUGCGGAAACUUGUG------UUCUUAAAUCGGA---UU-------------
((...(((((.(((((((((..........))))))).((((((((........))))))))....)).)------))))....))...---..------------- ( -23.30)
>DroYak_CAF1 2331 101 - 1
GAUCUGGAACCCAGGGUCAUCAACAACAUCAUGACCUCUCCGUAUUCCAAGGUCAGUGCGGAAAAAAAUC------UUUCUAGAUCACAAGUUUUUACCAAUAUGAA
(((((((((....(((((((..........))))))).((((((((........))))))))........------.)))))))))..................... ( -26.90)
>DroAna_CAF1 43781 79 - 1
GAUUUGGAGCCGCGAGUAAUCCAAAGCAUUAUGACCUCGCCGUAUGCAAAGGUUAAAGAUGAAAAU------------CUUAAAUAUAU---UU-------------
..((((((..(....)...))))))......((((((.((.....))..))))))(((((....))------------)))........---..------------- ( -17.70)
>consensus
GACUUGGAGCCCAGGGUCAUUAACAACAUCAUGACCUCUCCGUACUCCAAGGUCAGUGCGGAAACUGGUC______UUCUUAAAUCGGA___UUCUG___A______
(((((((((...((((((((..........)))).)))).....)))).)))))..................................................... ( -8.62 =  -8.32 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:21 2006