Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,178,133 – 19,178,310 |
Length | 177 |
Max. P | 0.645844 |
Location | 19,178,133 – 19,178,230 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 75.16 |
Mean single sequence MFE | -23.69 |
Consensus MFE | -18.01 |
Energy contribution | -18.07 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.26 |
Structure conservation index | 0.76 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19178133 97 - 22407834 AGGUAGUUGCAUUCCGGGAUGCAGUAGCAGCCCUGGAUGCCGUUGCUGAUUAUCACCAAAAUUAU------UACACAAGUCUACAACUAAAAACUGAAAUAAA------------ ...(((((((((((.(((.(((....))).))).)))))).((((..((((..............------......))))..))))....))))).......------------ ( -23.35) >DroSec_CAF1 41537 95 - 1 ACGUAGUUGCAUUCCGGGAUGCAGUAGCAGCCCUGGAUGCCGUUGCUGAUCAUCGCCAAAAUUAU------AACCCAAGUCUACAGCUGAAAACUGAAAUA-------------- ...(((((((((((.(((.(((....))).))).)))))).((((..(((...............------.......)))..))))....))))).....-------------- ( -22.35) >DroSim_CAF1 1833 97 - 1 ACGUAGUUGCAUUCCGGGAUGCAGUAGCAGCCCUGGAUGCCGUUGCUGAUCAUCUCCAAAAUUAU------UAAACAAGUCUACAGCUAAAAACUGAAAUAAA------------ ...(((((((((((.(((.(((....))).))).)))))).((((..(((...............------.......)))..))))....))))).......------------ ( -22.35) >DroYak_CAF1 2191 115 - 1 GAGAACUUGCAUUCCGGGAUGCAGUGGCAGCCCCAGGUGCUGUUGCUGACUAAAACUGAAGUUACUCAGACUAUACCGCUCUUCAUCUCAAAUCCGAAAUAAAACAAUUAGAAAA ...............(((((((((..((((((....).)))))..))).......((((......))))..............)))))).......................... ( -26.70) >consensus ACGUAGUUGCAUUCCGGGAUGCAGUAGCAGCCCUGGAUGCCGUUGCUGAUCAUCACCAAAAUUAU______UACACAAGUCUACAGCUAAAAACUGAAAUAAA____________ ..((((..((((((.(((.(((....))).))).))))))......(((((........)))))................))))............................... (-18.01 = -18.07 + 0.06)
Location | 19,178,190 – 19,178,310 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.00 |
Mean single sequence MFE | -43.82 |
Consensus MFE | -37.14 |
Energy contribution | -37.70 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.33 |
Structure conservation index | 0.85 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19178190 120 + 22407834 GCAUCCAGGGCUGCUACUGCAUCCCGGAAUGCAACUACCUCGGCAACAUGGCACUGCAGCAGUUCCCGUCCAGCAGUUGAAACAAAAGUUGGUGCACUGGAUGCAGGAGGGCAGGUUGCA ...(((.(((.(((....))).)))))).(((((((.(((((....)......(((((.((((...((.(((((..(((...)))..))))))).))))..)))))))))...))))))) ( -46.80) >DroSec_CAF1 41592 120 + 1 GCAUCCAGGGCUGCUACUGCAUCCCGGAAUGCAACUACGUCGGCAACAUGGCACUGCAGCAGUUCCCGUCCAGCAGUUGAAACAAAAGUUCGUGCACUGGAUGCAGGAGGGCAGGUUGCA ...(((.(((.(((....))).)))))).((((((...((((......)))).((((.....(((((((((((....((((.......))))....)))))))..)))).)))))))))) ( -41.10) >DroSim_CAF1 1890 120 + 1 GCAUCCAGGGCUGCUACUGCAUCCCGGAAUGCAACUACGUCGGCAACAUGGCACUGCAGCAGUUCCCGUCCAGCAGUUGAAACAAAAGUUCGUGCACUGGAUGCAGGAGGGCAGGUUGCA ...(((.(((.(((....))).)))))).((((((...((((......)))).((((.....(((((((((((....((((.......))))....)))))))..)))).)))))))))) ( -41.10) >DroEre_CAF1 2025 120 + 1 GCACCUAGGGCUGCCGCAGCAUCCCGGAAUGCAGCUUCCUCGGCAACAUGGCACUGCGGCAGUUCCAGUCCAGCAAUUGAAACAAAAGUUGGUGCACUGGAUGCAGGCGGGCAGAUUGCA (((......((((((((((....((((((......))))..(....)..))..))))))))))((((((.((.(((((........))))).)).)))))))))..((((.....)))). ( -45.50) >DroYak_CAF1 2266 120 + 1 GCACCUGGGGCUGCCACUGCAUCCCGGAAUGCAAGUUCUCCGGCAACAUGGCACUGCGGCAGUUCCAGUCCAGCAAUUGAAACAAAAGUUGGUGCACUGGAUGCAGGCGGGUAGAUUGCA ((((....).(((((.((((((((.(((((((.(((.((..(....)..)).)))...))).))))(((.((.(((((........))))).)).)))))))))))...)))))..))). ( -44.60) >consensus GCAUCCAGGGCUGCUACUGCAUCCCGGAAUGCAACUACCUCGGCAACAUGGCACUGCAGCAGUUCCCGUCCAGCAGUUGAAACAAAAGUUGGUGCACUGGAUGCAGGAGGGCAGGUUGCA ((((((.(((.(((....))).))))).))))..........(((((.((.(.(((((.((((.(....(((((..(((...)))..))))).).))))..)))))...).)).))))). (-37.14 = -37.70 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:20 2006