Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,154,617 – 19,154,718 |
Length | 101 |
Max. P | 0.520474 |
Location | 19,154,617 – 19,154,718 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 93.85 |
Mean single sequence MFE | -20.35 |
Consensus MFE | -17.67 |
Energy contribution | -17.93 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.87 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19154617 101 - 22407834 UGCUGCAGAUAUGUAUAUCUUGUAGCAUACGUACAUAGGCUAGGUAUGUGUAUGUUUCUGUUGCACUUAGAUUUACUUAAUAUUCCACUAGUAUUAAUACU (((((..((((((((.(((((((((((.(((((((((.((...)).)))))))))...)))))))...)))).)))...)))))....)))))........ ( -22.30) >DroSim_CAF1 35160 101 - 1 UGCUGCAGAUAUGUAUAUCUUGUAGCAUACGUACAUAGGCUAGGUAUGUGUAUGUUUCUGUUGCACUUAGAUUUACUUAAUAUUCCACUAGUAUUAAUACU (((((..((((((((.(((((((((((.(((((((((.((...)).)))))))))...)))))))...)))).)))...)))))....)))))........ ( -22.30) >DroEre_CAF1 33795 97 - 1 UGUUGCUAAU----AUAUCUUGUAGCAUACGUACAUAGGCUAGGUAUGUGUAUGUUUCUGUUGCACUUAGAUUUACUUAAUAUUCCACUAGUAUUAAUACU .........(----(.(((((((((((.(((((((((.((...)).)))))))))...)))))))...)))).)).((((((((.....)))))))).... ( -19.10) >DroYak_CAF1 33800 97 - 1 UGCUGCUUAU----AUAUCUUGUAGCAUACGUACAUAAGCUAGGUAUGUGUAUUUUUCUGUUGCACUUAGAUUUAGUUAAUAUUCCACUAGUAUUAAUACU ((((((....----.......))))))...(((.....(((((((..(((((.........)))))....)))))))(((((((.....))))))).))). ( -17.70) >consensus UGCUGCAGAU____AUAUCUUGUAGCAUACGUACAUAGGCUAGGUAUGUGUAUGUUUCUGUUGCACUUAGAUUUACUUAAUAUUCCACUAGUAUUAAUACU ................(((((((((((.(((((((((.((...)).)))))))))...)))))))...))))....((((((((.....)))))))).... (-17.67 = -17.93 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:13 2006