Locus 6847

Sequence ID 2L_DroMel_CAF1
Location 19,153,229 – 19,153,332
Length 103
Max. P 0.781762
window10915

overview

Window 5

Location 19,153,229 – 19,153,332
Length 103
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 87.12
Mean single sequence MFE -21.60
Consensus MFE -16.78
Energy contribution -17.54
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.78
SVM decision value 0.56
SVM RNA-class probability 0.781762
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19153229 103 + 22407834
CCUAGUUGGUAAUGACCAUAAAAAGCUGAACUUGCUUAUACACAGGUUUAGACAUCUAC-UAUUUACCACAAAGCCAAUGAUUUCUGGUCUUGAUCAUUGGGUC
((((((((((((.............(((((((((........)))))))))........-...))))))(((..(((........)))..)))...)))))).. ( -24.85)
>DroSim_CAF1 33739 103 + 1
CCUAGUUGGUAAUGACCAUAAAAAGCUGAACUUGCUUAUACACAGGUUUAGACAUCUAC-UAUUUACCACAUAGCCAACGAUUUCUGGUCUUGAUCAUUGGUUC
....((.(((((.............(((((((((........)))))))))........-...)))))))..((((((.((((.........)))).)))))). ( -21.85)
>DroEre_CAF1 32354 90 + 1
CCUUGUUGGUAAUGACCAUAAAAAGCUGAACUUGCUUAUACACAGGUUUAGACAUCUAUGUAUUUACCACAUAGCCAACGAUUUCUGGU--------------C
..((((((((.(((...........(((((((((........)))))))))(((....)))........))).))))))))........--------------. ( -21.10)
>DroYak_CAF1 32497 100 + 1
CCAAGUUGGUAAUGACCAUAAAAAGCUGAACUUGCUUAUACACAUGUUUAGACAUCUA----UUUACCACAUAGCCAACAAUUUCUGGUUUUGAACAUUGGUUC
((((((((((((.....(((.....((((((.((........)).)))))).....))----)))))).((.(((((........))))).))))).))))... ( -18.60)
>consensus
CCUAGUUGGUAAUGACCAUAAAAAGCUGAACUUGCUUAUACACAGGUUUAGACAUCUAC_UAUUUACCACAUAGCCAACGAUUUCUGGUCUUGAUCAUUGGUUC
......((((((.............(((((((((........)))))))))............))))))((..((((........))))..))........... (-16.78 = -17.54 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:10 2006