| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,142,205 – 19,142,316 |
| Length | 111 |
| Max. P | 0.594685 |
| Location | 19,142,205 – 19,142,316 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 89.06 |
| Mean single sequence MFE | -25.51 |
| Consensus MFE | -18.03 |
| Energy contribution | -18.16 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19142205 111 + 22407834 UGCUAAUGCUGUUAUUAUUUAUCUU-UUAUACCCGGCACUCGUAAAUUUUAGAGGGUAUAUUGUGUUCGUGCAAAGGUACAUAAAAGGAUACUAUAAA-AAUGGUAUUUUUAU------ ....(((((((((.((((.((((((-((((((((...................)))))))((((((.(.(....).).)))))))))))))..)))).-))))))))).....------ ( -23.61) >DroSim_CAF1 29783 113 + 1 UGCUAAUGCUGUUAUUAUUUAUCUUUUUAUACCCGGCAAUCGUAAAUUUUAGAGGGUAUAUUGUAUUCGUGCCAAGCUACGUAAAAGGAUACUAUAAAAAAUGGUAUUUUUAU------ ....(((((((((.((((.(((((((((((((((...................))))).........(((((...)).)))))))))))))..))))..))))))))).....------ ( -20.01) >DroEre_CAF1 28465 117 + 1 UGCUAAUGCUGUUAUUAUUUAUCUU-UUAUACCCGGCCCUCGUAAAUUUUAGAGGGUAUAUUGUAUUCGUACCAAGGUACGUAAAAGGAUACUAUAAA-AAUGGUAUUUGUAUUUUAUG (((.(((((((((.((((.((((((-((((((...((((((..........)))))).....)))).(((((....)))))..))))))))..)))).-))))))))).)))....... ( -33.00) >DroYak_CAF1 28467 118 + 1 UGCUAAUGGUGUUAUUAUUUAUCUUCUUAUACCCGGUCCUCGUAAAUUUUAGGGGGUAUAUUGUAUUCGUGCCAAGGUACGUAAAAGGAUACAAUAAA-AAUAGUAUUGUUAUCUUAUA ...(((((.((((.(((((((((((..(((((((...(((.(......).)))))))))).......(((((....)))))....)))))).))))).-)))).))))).......... ( -25.40) >consensus UGCUAAUGCUGUUAUUAUUUAUCUU_UUAUACCCGGCACUCGUAAAUUUUAGAGGGUAUAUUGUAUUCGUGCCAAGGUACGUAAAAGGAUACUAUAAA_AAUGGUAUUUUUAU______ ....(((((((((..(((.((((((..(((((((...................)))))))........((((....)))).....))))))..)))...)))))))))........... (-18.03 = -18.16 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:07 2006