Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,139,017 – 19,139,111 |
Length | 94 |
Max. P | 0.894588 |
Location | 19,139,017 – 19,139,111 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 89.72 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -25.89 |
Energy contribution | -25.70 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.77 |
Structure conservation index | 0.90 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19139017 94 + 22407834 CUACGCCAAAGUUCUUUUGGGAAAUUAGUGGGGAGUAACCCACUCGAAAUGGCAGUGGAAACAUUCAAAGGCCCCUGGGAGAAUGAGAGGUCGC ...((((...(((((((..((.....((((((......))))))......(((((((....)))).....)))))..)))))))....)).)). ( -32.80) >DroSim_CAF1 26756 94 + 1 CUACGUCAAAGUUCUUUGGGGAAAUUAGUGGGGAGUAACCCACUCGAAGUGGCAGAGGAAACGUUCAAAGGCCCCUGGGAGAAUGAGAGGUCGC ..((.((...(((((((.(((.....((((((......))))))......(((....((.....))....)))))).)))))))..)).))... ( -29.00) >DroEre_CAF1 25381 94 + 1 CUACAUUAAAGUUCUUCGGGGAAAUUAGUGGGGAGUAACCCACUCGAAGUGGCAGAGGAAACGUUCAAAGGCCCCUGGGAGAAUGAGAGGUCGC ..........(((((((.(((.....((((((......))))))......(((....((.....))....)))))).))))))).......... ( -27.60) >DroYak_CAF1 25570 84 + 1 CUACGCCAAAGUUCUUUGGGGAAAUUAGUGGGGAGUAACCCACUCGAAGUGGCAGAGGAAUCGUUCAAAGGCCCCUGGGAGAAU---------- ..........(((((((.(((.....((((((......))))))......(((....((.....))....)))))).)))))))---------- ( -25.30) >consensus CUACGCCAAAGUUCUUUGGGGAAAUUAGUGGGGAGUAACCCACUCGAAGUGGCAGAGGAAACGUUCAAAGGCCCCUGGGAGAAUGAGAGGUCGC ..........(((((((.(((.....((((((......))))))......(((....((.....))....)))))).))))))).......... (-25.89 = -25.70 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:06 2006