Locus 6842

Sequence ID 2L_DroMel_CAF1
Location 19,137,980 – 19,138,100
Length 120
Max. P 0.891141
window10908

overview

Window 8

Location 19,137,980 – 19,138,100
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -30.47
Consensus MFE -29.67
Energy contribution -29.57
Covariance contribution -0.11
Combinations/Pair 1.05
Mean z-score -2.02
Structure conservation index 0.97
SVM decision value 0.96
SVM RNA-class probability 0.891141
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19137980 120 + 22407834
UGUAACUUGUUUUGCAUUUGGCGUUUGCGUUUCUUGGUUGUAAAAUGUCAGUGUUAAAUAAUACUGUGUUUAAUAAACCAGAAAAACGUAAGCAAAUUUACCGUUGUCUGCGGUGACUAA
(((((......)))))......((((((((((.((((((.((((....(((((((....)))))))..))))...))))))..))))))))))....(((((((.....))))))).... ( -34.60)
>DroSim_CAF1 25732 120 + 1
UGUAACUUGUUUUGCAUUUGGCGUUUGUGUUCCUUGGUUGUAAAAUGUCAGUGUUAAAUAAUACUGUGUUUAAUAAACCAGAAAAACGUAAGCAAAUUUACCGUUGUCUGCGGUGACUAA
..........(((((.....((((((...(((..(((((.((((....(((((((....)))))))..))))...))))))))))))))..))))).(((((((.....))))))).... ( -29.50)
>DroYak_CAF1 24449 120 + 1
UGUAACUGGUUUUGCAUUUGGCGUUUGUGUUCCGUGGUUGUAAAAUGUCAGUGUUAAAUAAUAUUGUGUUUAAUAAACCAGAAAAACGUAAGCAAAUUUACCGUUGUCUGCGGUGACUAA
.....((((((......(((((((((.....(....).....)))))))))(((((((((......)))))))))))))))................(((((((.....))))))).... ( -27.30)
>consensus
UGUAACUUGUUUUGCAUUUGGCGUUUGUGUUCCUUGGUUGUAAAAUGUCAGUGUUAAAUAAUACUGUGUUUAAUAAACCAGAAAAACGUAAGCAAAUUUACCGUUGUCUGCGGUGACUAA
(((((......)))))......(((((((((..((((((.((((....(((((((....)))))))..))))...))))))...)))))))))....(((((((.....))))))).... (-29.67 = -29.57 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:04 2006