Locus 6841

Sequence ID 2L_DroMel_CAF1
Location 19,136,509 – 19,136,604
Length 95
Max. P 0.514240
window10907

overview

Window 7

Location 19,136,509 – 19,136,604
Length 95
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 86.28
Mean single sequence MFE -29.45
Consensus MFE -17.67
Energy contribution -19.54
Covariance contribution 1.87
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.60
SVM decision value -0.04
SVM RNA-class probability 0.514240
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19136509 95 - 22407834
GCAAGCAGCGUGUGAACUUUUUGUGGGGGG-------AAGAAAGGAGGCAUGGCUUCCAAUGCUUUCCAAGUGCAAGAAGACUGGAGAACUCAAGGCUGUGA
....(((((.......(((((((((..(((-------(((...((((((...))))))....))))))...))))))))).((.((....)).))))))).. ( -31.90)
>DroSim_CAF1 24273 101 - 1
GCAAGCAGCGUGUGAACUUUUUGUGGGGGGAAGUCGGAAGAAAGGAGGGAUGGCUUCCAAUGCUUUC-GAGUGCCAGAAGACUGGAGAACUCAAGGCUGUGA
....(((((...............(..((.(..((....))..(((((.....)))))..).))..)-((((.((((....))))...))))...))))).. ( -31.10)
>DroEre_CAF1 22779 99 - 1
GCAAGCAGCGUGUGAACUUUUUGUGUGGGG-AGCGGGAAGAAAGGAGGG-CAGCUUCCAAUGCUUCC-AAGUGCAAGAAGACUGGAGAACUCAAGGCUGUGA
....(((((.......(((((((..(.(((-(((.(((((....(....-)..)))))...))))))-..)..))))))).((.((....)).))))))).. ( -32.60)
>DroYak_CAF1 23062 90 - 1
GCAAGCAGCGUGUGAACUUUUUGUGUGU-G-AGCGGGAAGAAAGGAGGG---------AAUGCUUCC-AAGUGCAAGAAGACUGGAGAACUCAAGGCUGUGA
....((((((..(...((((((((....-.-.))))))))...(((((.---------....)))))-..)..).......((.((....)).))))))).. ( -22.20)
>consensus
GCAAGCAGCGUGUGAACUUUUUGUGGGGGG_AGCGGGAAGAAAGGAGGG_UGGCUUCCAAUGCUUCC_AAGUGCAAGAAGACUGGAGAACUCAAGGCUGUGA
....(((((.......((((((((...........(((((...(((((.....)))))....))))).....)))))))).((.((....)).))))))).. (-17.67 = -19.54 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:03 2006