Locus 6840

Sequence ID 2L_DroMel_CAF1
Location 19,136,189 – 19,136,301
Length 112
Max. P 0.704655
window10906

overview

Window 6

Location 19,136,189 – 19,136,301
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 86.16
Mean single sequence MFE -27.34
Consensus MFE -18.66
Energy contribution -19.97
Covariance contribution 1.31
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.68
SVM decision value 0.36
SVM RNA-class probability 0.704655
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19136189 112 + 22407834
GUGAUUUUCUUGGAACAUAAACAGCAGCAUGUGUUUCUUUGUUUAAUGUGCUUUUGUUGGAUCUUCUGCUGUUGUAUUCGAAAGAGCAAAGUUUCGAACUAAGGGAUUACAG
((((.(..(((((......(((((.(((((((.............))))))).)))))(((.(((.((((.((........)).))))))).)))...)))))..))))).. ( -27.72)
>DroSim_CAF1 23971 112 + 1
GUGAUUUUCUUGGAACAUAAACAGCAGCAUGUGUUUCUUUGUUUAAUGUGCUUUUGUUGGUUCUUCUGCUGUUGUAUUCGAAAGAGCAAAGUUUCGAACUAAGGGAGUACAG
...........((((((((..(....)..)))))))).........(((((((((.(((((((....(((.((((..((....)))))))))...)))))))))))))))). ( -27.40)
>DroEre_CAF1 22464 112 + 1
GUGAUUUUCUCGGAACAUAAGCAGCAGCAUGUGUUUCUUUGUUUAAUGUGCUUUUGUUGGUUCUUUUGCUGUUGUAUUCGAAAAAGCAAAGUUUCCAACUAAGGGAGUACAG
...........((((((((.((....)).)))))))).........((((((((((((((...(((((((.(((....)))...)))))))...)))))...))))))))). ( -32.40)
>DroYak_CAF1 22774 92 + 1
GUGAUUUUCUUGGAAUAUAAGCAGCAGCAUGUGUUUCUUUGUUUAAUAUGCUUUUGUUUGUUCUUUUGCUGU--------------------UUCGAACUAAGGGAAUACAG
(((.((..(((((...((((((((.(((((((.............))))))).))))))))...((((....--------------------..)))))))))..))))).. ( -21.82)
>consensus
GUGAUUUUCUUGGAACAUAAACAGCAGCAUGUGUUUCUUUGUUUAAUGUGCUUUUGUUGGUUCUUCUGCUGUUGUAUUCGAAAGAGCAAAGUUUCGAACUAAGGGAGUACAG
((.(((..((((((((...(((((.(((((((.............))))))).))))).))))...((((.((........)).))))...........))))..))))).. (-18.66 = -19.97 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:02 2006