Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,135,456 – 19,135,574 |
Length | 118 |
Max. P | 0.579309 |
Location | 19,135,456 – 19,135,574 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.38 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -21.12 |
Energy contribution | -20.75 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.15 |
Mean z-score | -1.88 |
Structure conservation index | 0.73 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19135456 118 - 22407834 CCACACCCAAAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUGUCCAUAC-CCCCAAAGGUAAAAUAACACUAAAACAAAAGCUCGCGAGCGGUAGUGCUCUCUACACAGAG .((((((.......((((...(((((..(.((((.((((.....)))))))))...)-))))..))))....................(((....)))))).)))((((......)))) ( -27.60) >DroSim_CAF1 23254 118 - 1 CCACACCCAAAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUGUCCAUAC-CCCCAAAGGUAAAAUAACACUAAAACAAAAGCUCGCGGGCGGUGGUGUUCUCUACACGGAG ((.((((.......((((...(((((..(.((((.((((.....)))))))))...)-))))..))))....................(((....)))))))((((.....)))))).. ( -32.40) >DroEre_CAF1 21751 116 - 1 CCACACCCAGAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUAUCCCCACUCCCCAAAGGUAAAAUAACACUAAAACAAAAGCUUGCGGGCGG---AGCUCUCUACAGAGAG ...(.(((......((((...(((((.((.((..(((((.....)))))..)))).)))))...))))...............(((....))).))).).---..(((((....))))) ( -28.80) >DroYak_CAF1 22060 114 - 1 CCACACCCAAAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUAUCCAUAC-CCCCAAAGGUAAAA-AACACUAAAACAAAAGCUUGCGAGCAG---CGCUCUCGACAGAGAG ................((((((((((.(((....(((((.....))))).)))...)-))))...(((....-...))).............)))))...---..(((((....))))) ( -26.60) >consensus CCACACCCAAAAUAACCUCGCGGGGGCGGAGGCAAUAAAAUCAUUUUAUAUCCAUAC_CCCCAAAGGUAAAAUAACACUAAAACAAAAGCUCGCGAGCGG___UGCUCUCUACACAGAG ................((((((((((.(..((..(((((.....)))))..))...).))))...(((........)))............))))))........(((((....))))) (-21.12 = -20.75 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:01 2006