Locus 6837

Sequence ID 2L_DroMel_CAF1
Location 19,123,871 – 19,123,979
Length 108
Max. P 0.658282
window10902

overview

Window 2

Location 19,123,871 – 19,123,979
Length 108
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 65.18
Mean single sequence MFE -34.90
Consensus MFE -16.92
Energy contribution -16.90
Covariance contribution -0.02
Combinations/Pair 1.57
Mean z-score -1.44
Structure conservation index 0.48
SVM decision value 0.26
SVM RNA-class probability 0.658282
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19123871 108 + 22407834
AUGUAAAAGCAUCGUA--UUUUUCCCACAGACGUCGCCACAGCCAGUUGCUGGCGCUGCCCGAAUUGUUCACCCACGUGGACACUGUCUAUGCGGGCACGUAUCGCAUCG
........(((((((.--..............(.((((((((....))).)))))).(((((...(((((((....))))))).........)))))))).)).)).... ( -28.60)
>DroVir_CAF1 11994 102 + 1
---UUGCA---AUGCC--UUUGCUCUGCAGACGCCCACAGGCGCAAUUGCUUUGCCUGCCGGAGCUGUUCGCACGCGUGGACAUUGUGCACGGAGGACACUAUCGAAUCG
---.((((---.....--...(((((((((..(((....)))((((.....))))))).))))))(((((((....)))))))...))))(((((....)).)))..... ( -33.00)
>DroPse_CAF1 17056 99 + 1
---UAACAG-----C---CGCUUCUUGCAGGCGCGGGCAGAGUCAGCUCCUUUGCCUGCCCGAGCUGUUUGCCCGUGUGGACCUUGUCCAUACGGGAAACUACCGCAUCG
---.(((((-----(---(((.....)).((.((((((((((.......))))))))))))).))))))..(((((((((((...))))))))))).............. ( -47.90)
>DroSec_CAF1 11016 107 + 1
-UGUUAAAGCAUCGUG--UUUUUCCCACAGACGUCGUCACAGCCAGUUGCUGGCGCUGCCCGAAUUGUUCACCCAUGUGGACACGGUCUACGCGGGCACAUAUCGUAUCG
-......(((...(((--.......))).(((...)))...(((((...))))))))(((((...(((((((....)))))))((.....)))))))............. ( -30.00)
>DroWil_CAF1 14905 104 + 1
-CAUUA-----UCAUUUUUGCUUCUUACAGACGUCCUCAGUCACAAUUGCUUUGCCUGCCUGAACUUUUUGCCCGUGUGGAUAUUGUUCAUUCGGGCAAUUAUCGCUUGG
-.....-----................((..((...((((.(((((.....)))..)).)))).....(((((((.((((((...)))))).)))))))....))..)). ( -22.00)
>DroPer_CAF1 16715 99 + 1
---UAACAG-----C---CGCUUCUUGCAGGCGCGGGCAGAGUCAGCUCCUUUGCCUGCCCGAGCUGUUUGCCCGUGUGGACCUUGUCCAUACGGGAAACUACCGCAUCG
---.(((((-----(---(((.....)).((.((((((((((.......))))))))))))).))))))..(((((((((((...))))))))))).............. ( -47.90)
>consensus
___UAACAG__UCGC___UGCUUCCUACAGACGCCGGCAGAGCCAGUUGCUUUGCCUGCCCGAACUGUUCGCCCGUGUGGACAUUGUCCAUGCGGGAAACUAUCGCAUCG
.............................((.((.(((((((.......))))))).))............(((.(((((((...))))))).)))......))...... (-16.92 = -16.90 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:58 2006