Locus 6834

Sequence ID 2L_DroMel_CAF1
Location 19,109,508 – 19,109,628
Length 120
Max. P 0.890404
window10898

overview

Window 8

Location 19,109,508 – 19,109,628
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.89
Mean single sequence MFE -49.42
Consensus MFE -22.46
Energy contribution -23.27
Covariance contribution 0.81
Combinations/Pair 1.39
Mean z-score -2.26
Structure conservation index 0.45
SVM decision value 0.96
SVM RNA-class probability 0.890404
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19109508 120 + 22407834
ACUCUGGGAGCCGAGGGAUUGCGAAACCAUGUGCGCAAGCACAUCGAGUUGGCCAAACAGUUUGAGCAGCUUGUGCUCAAGGAUUCGCGAUUCGAGCUGGUGGCUCCUCGUGCCCUGGGA
..((..((.((((((((((((((((.((.((.((((((((...((((..((......))..))))...)))))))).)).)).))))))))))((((.....)))))))).))))..)). ( -60.30)
>DroPse_CAF1 36030 120 + 1
ACGCUGGGCGCCGAGGGACUGCGCAGCCAUGUGCGUAAGCACAUCGCGCUGGCGCAACAAUUCGAGGCAUUUGUGAGGAACGACUCGCGUUUCGAAAUGGUUGCCCCCCAAGCACUGGGA
.....((((((((......(((((((((((((((....)))))).).))).)))))....((((((((....(((((......))))))))))))).))).)))))((((.....)))). ( -53.50)
>DroEre_CAF1 30760 120 + 1
ACUCUGGGAGCCGAGGGAUUGAGGAACCAUGUGCGUAAGCACAUCGAGUUGGCCAAACAGUUCGAGCAGCUUGUGCUGAAGGAUUCCCGAUUUGAGCUGGUGGCUCCUCGCGCUCUGGGA
..(((.((((((((((........((((((((((....)))))).).)))(((((..(((((((((((((....))))..((....))..))))))))).)))))))))).))))).))) ( -55.30)
>DroWil_CAF1 54331 120 + 1
ACUCUUGGCGCCGAAGGAUUGCGUGCCCAUGUCCGUAAACACAUCAGUCUGGCCGAGCAGUUCGAGAAACUGGUGAAAGAUGACAAACGUUUUGAAUUAGUUGCUCCACGCGCAUUGGGU
((((...((((....(((((((..(((..((...((....))..))....)))...)))))))(((.(((((((..((((((.....))))))..))))))).)))...))))...)))) ( -36.30)
>DroAna_CAF1 34472 120 + 1
ACCCUGGGCGCCGAAGGAUUGCGCAACCAUGUCCGCAAACACAUCGAACUGGCCAAGCAAUUCGAGGAUUUGGUCGUCAAGGACAGUCGCUUUGAGAUCGUGGCCCCUCGAGCUUUGGGC
.(((..(((..(((.((.(((((..........)))))............(((((.....(((((((.....(((......))).....)))))))....)))))))))).)))..))). ( -37.60)
>DroPer_CAF1 33689 120 + 1
ACGCUGGGCGCCGAGGGACUGCGCAGCCAUGUGCGUAAGCACAUCGCGCUGGCGCAACAAUUCGAGGCAUUUGUGAGGAACGACUCGCGUUUCGAAAUGGUUGCCCCCCAAGCACUGGGA
.....((((((((......(((((((((((((((....)))))).).))).)))))....((((((((....(((((......))))))))))))).))).)))))((((.....)))). ( -53.50)
>consensus
ACUCUGGGCGCCGAGGGAUUGCGCAACCAUGUGCGUAAGCACAUCGAGCUGGCCAAACAAUUCGAGGAACUUGUGAUGAAGGACUCGCGUUUCGAAAUGGUGGCCCCUCGAGCACUGGGA
...((.((.((((.(((...........((((((....))))))......(((((.....(((((((.....((........)).....)))))))....)))))))))).)).)).)). (-22.46 = -23.27 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:55 2006