Locus 6833

Sequence ID 2L_DroMel_CAF1
Location 19,090,578 – 19,090,677
Length 99
Max. P 0.752800
window10897

overview

Window 7

Location 19,090,578 – 19,090,677
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 93.13
Mean single sequence MFE -22.64
Consensus MFE -18.64
Energy contribution -18.36
Covariance contribution -0.28
Combinations/Pair 1.21
Mean z-score -1.51
Structure conservation index 0.82
SVM decision value 0.48
SVM RNA-class probability 0.752800
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19090578 99 + 22407834
AUCGCGAACAUAAAUAUUGUCUGGGAUUUAUGUGUUCUUUUUAUGAAGGUUCCUUCACGUGACAAAUAAAGUGUAGCUCAUAACUCUCGCCAUCCUCUC
...((((.((.......)))).((((.(((((.((((.((((((((((....))))).........))))).).))).))))).))))))......... ( -16.50)
>DroSec_CAF1 12727 99 + 1
AUCGCGAACAUAAAUAUUGUCUGGGAUUUAUGAGUUCCUUUUAUGAAGGGUCCCUCACGUGACAAAUAAAGUGUAGCUCAUAACUCUCGCCAUCCUCUC
...((((.((.......)))).((((.((((((((((.((((((.....(((.(....).)))..)))))).).))))))))).))))))......... ( -20.50)
>DroSim_CAF1 14105 99 + 1
AUCGCGAACAUAAAUAUUGUCUGGGAUUUAUGAGUUCCUUUUAUGAAGGGUCCUUCACGUGACAAAUAAAGUGUAGCUCAUAACUCUCGCCAUCCUCAC
...((((.((.......)))).((((.((((((((((((((..(((((....)))))..........)))).).))))))))).))))))......... ( -20.90)
>DroEre_CAF1 12442 99 + 1
AUCGCAAACAUAAAUAUUGUCUGGGACUUAUGAGUUCCUUUUAUGGAGGCUCCUCCACGUGACAAAUAAAGUGUUGCUCAUAACUCCCGGAAUCCUCUC
...................(((((((.((((((((..(((((((((((....))))).........))))).)..)))))))).)))))))........ ( -29.50)
>DroYak_CAF1 14736 99 + 1
AUCGCAAACAUAAAUAUUGUCUGGGAUUUAUGAGUUCCCUUUAUGGAGGCUCCUUCACGUGACAAAUAAAGUGUAGCUCAUAACUCUCGGAAUCCUCUC
...................(((((((.(((((((((.(((((((((((....))))).........))))).).))))))))).)))))))........ ( -25.80)
>consensus
AUCGCGAACAUAAAUAUUGUCUGGGAUUUAUGAGUUCCUUUUAUGAAGGCUCCUUCACGUGACAAAUAAAGUGUAGCUCAUAACUCUCGCCAUCCUCUC
......................((((.(((((((((.(((((((((((....))))).........))))).).))))))))).))))........... (-18.64 = -18.36 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:53 2006