Locus 6832

Sequence ID 2L_DroMel_CAF1
Location 19,089,988 – 19,090,081
Length 93
Max. P 0.988802
window10896

overview

Window 6

Location 19,089,988 – 19,090,081
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 78.33
Mean single sequence MFE -25.59
Consensus MFE -15.75
Energy contribution -15.53
Covariance contribution -0.22
Combinations/Pair 1.13
Mean z-score -3.18
Structure conservation index 0.62
SVM decision value 2.14
SVM RNA-class probability 0.988802
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19089988 93 - 22407834
CCCCCAUUUCAGAGCCUGGCCAACCAUUUUCUGCGCCAUCUUGGCUUCAUCAAACGCACACAAAAGACC--AUAAAGGCAAAGCCAAGAUAAUGG---------
...(((((.(((((..(((....)))..)))))....((((((((((..((..................--.....))..)))))))))))))))--------- ( -21.60)
>DroPse_CAF1 15903 99 - 1
CCUCCA---CAGGCCGCCUUCAACCAUUUUCUGCGCCAUCUUGGCUUCAUCAAACGCACACAAAAGACC--AUAAAGGCAGAGCCAAGAUAAUGGCAGGCCAUC
......---..((((((...............))(((((((((((((..((..................--.....))..)))))))))...)))).))))... ( -26.16)
>DroGri_CAF1 17889 91 - 1
-CCCCAUUU--------AUCCAACCAU--UCGGCGCCAUCUUGGCUUCAUCAAACGCACACAAAAGCCC--AUAAGGGCAAAGCCAAGAUAAUGGUAGCCUGGC
-........--------......(((.--..((((((((((((((((........(....)....((((--....)))).)))))))))...)))).)))))). ( -28.40)
>DroWil_CAF1 22228 97 - 1
CCCACCCUUGAGAGUAUUUUCAACCAUU-UCUACGCCAUCUUGGCUUCAUCAAACGCACACAAAAGCCCCUAUAAAGGCAAAGCCAAGAUAAUGGCAG------
.......((((((....)))))).....-.....(((((((((((((........(....)....(((........))).)))))))))...))))..------ ( -22.20)
>DroMoj_CAF1 20768 91 - 1
-CCCCAUUA--------ACUCAACCGU--UCGGCGCCAUCUUGGCUUCAUCAAACGCACACAAAAGCCC--AUAAGGGCAAAGCCAAGAUAAUGGUAGCCAGGC
-........--------........((--..((((((((((((((((........(....)....((((--....)))).)))))))))...)))).)))..)) ( -29.00)
>DroPer_CAF1 13544 99 - 1
CCUCCA---CAGGCCGCCUUCAACCAUUUUCUGCGCCAUCUUGGCUUCAUCAAACGCACACAAAAGACC--AUAAAGGCAGAGCCAAGAUAAUGGCAGGCCAUC
......---..((((((...............))(((((((((((((..((..................--.....))..)))))))))...)))).))))... ( -26.16)
>consensus
CCCCCAUUUCAG__C__AUUCAACCAUU_UCUGCGCCAUCUUGGCUUCAUCAAACGCACACAAAAGACC__AUAAAGGCAAAGCCAAGAUAAUGGCAG_C___C
..................................(((((((((((((..((.........................))..)))))))))...))))........ (-15.75 = -15.53 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:53 2006