Locus 6831

Sequence ID 2L_DroMel_CAF1
Location 19,085,509 – 19,085,602
Length 93
Max. P 0.776912
window10895

overview

Window 5

Location 19,085,509 – 19,085,602
Length 93
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.23
Mean single sequence MFE -25.47
Consensus MFE -15.48
Energy contribution -17.78
Covariance contribution 2.31
Combinations/Pair 1.22
Mean z-score -1.99
Structure conservation index 0.61
SVM decision value 0.55
SVM RNA-class probability 0.776912
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19085509 93 - 22407834
UU-UUGUCCGCCACC-----CUCGUUUCGUCUUUAUUUAACUUUGUCGAAUUGAUUUCGUUAGAGCAACAACAA---CAA---CUGCUCAAAGGGGCGGGUGAUC
..-(..((((((.((-----.(((.((((.(.............).)))).)))........(((((.......---...---.)))))...))))))))..).. ( -25.62)
>DroSec_CAF1 7691 93 - 1
UU-UUGUCCGCCACC-----CUCGAUUCGUCUUUAUUUAACUUUGUCGAAUUGAUUUCGUUAGAGCAACAACAA---CAA---CUGCCCAAAGGGGCGGGUGAUC
..-(..((((((.((-----.((((((((.(.............).))))))))........(.(((.......---...---.))).)...))))))))..).. ( -24.92)
>DroSim_CAF1 7666 93 - 1
UU-UUGUCCGCCACC-----CUCGAUUCGUCUUUAUUUAACUUUGUCGAAUUGAUUUCGUUAGAGCAACAACAA---CGA---CUGCUCAAAGGGGCGGGUGAUC
..-(..((((((.((-----.((((((((.(.............).))))))))........(((((.......---...---.)))))...))))))))..).. ( -29.72)
>DroEre_CAF1 7035 93 - 1
CU-UUGUCCGCCACC-----CUCGAUUCGUCUUUAUUUAACUUUGUCGAAUUGAUUUCGUUAGAGCAACAGCAA---CAA---CUUCUCUGAGGGGCGGGUGAAC
.(-(..((((((.((-----.((((((((.(.............).)))))))).....((((((....((...---...---)).))))))))))))))..)). ( -27.82)
>DroWil_CAF1 13866 91 - 1
UUUUGGGUUGCCACCCACCUCCCAGUUUGCCCUUAGUUGACUUUGUCGAAUUGAUUUCGUUAGGGAAACA-CAACAACAAAAGGCGUCCAGA-------------
...(((((....))))).......(..((((.((.((((.((....((((.....))))..))(....).-...)))).)).))))..)...------------- ( -21.00)
>DroYak_CAF1 9458 96 - 1
UU-UUGUCCGCCACC-----CUCGAUUCGUCUUUAUUUAACUUUGUCGAAUUGAUUUCGUUAAAGCAACAACAACAACAA---CAGCCAUAAGGGGCGGGUGAUC
..-(..((((((.((-----.((((((((.(.............).))))))))....(((.....)))...........---.........))))))))..).. ( -23.72)
>consensus
UU_UUGUCCGCCACC_____CUCGAUUCGUCUUUAUUUAACUUUGUCGAAUUGAUUUCGUUAGAGCAACAACAA___CAA___CUGCCCAAAGGGGCGGGUGAUC
...(..((((((.((......((((((((.(.............).))))))))........(((((.................)))))...))))))))..).. (-15.48 = -17.78 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:52 2006