Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,995,880 – 1,995,971 |
Length | 91 |
Max. P | 0.636872 |
Location | 1,995,880 – 1,995,971 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 75.24 |
Mean single sequence MFE | -25.02 |
Consensus MFE | -8.36 |
Energy contribution | -8.12 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.29 |
Mean z-score | -1.80 |
Structure conservation index | 0.33 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1995880 91 - 22407834 AUGGAGUAAGAUGUCAGUUGCACUU-GCAUUUGCAC------CUGCAGUUGCAUUCGCCAUUUCCCGUCGCACUUGCAAUCUCGCAUUUAUUUAUUGU ...(((((.(((((.(((((((..(-(((.((((..------..)))).))))...((.((.....)).))...))))).)).))))))))))..... ( -20.60) >DroPse_CAF1 15484 96 - 1 AUGGCAAAAGAUGUCAGCCUCUGUUUCCGUUUCCGCUUCGUGCGGCAGUUGCAAUUUCGACU-GCAGUUGCAGUGGCAAUCUUUCA-UUAUUUAUGAU .(((((.....)))))(((.((((..(......(((.....)))(((((((......)))))-)).)..)))).)))......(((-(.....)))). ( -29.40) >DroSec_CAF1 13569 91 - 1 AUGCAGUAAGAUGUCAGUUGCACUU-GCAUUCGCAC------CUGCAGUUGCAGUCGCCAUAUUCCGUCGCAGUUGCAAUCUCGCAUUUAUUUAUUGU ..((((((((((((.(((((((.((-((....((..------((((....))))..))(.......)..)))).))))).)).)))))...))))))) ( -24.70) >DroSim_CAF1 10412 91 - 1 AUGCAGUAAGAUGUCAGUUGCACUU-GCAUUUGCAC------CUGCAGUUGCAGUCGCCAUUACCCGUCGCAGUUGCAAUCUCGCAUUUAUUUAUUGU ..((((((((((((.(((((((.((-((....((..------((((....))))..))(.......)..)))).))))).)).)))))...))))))) ( -24.40) >DroPer_CAF1 14331 96 - 1 AUGGCAAAAGAUGUCAGCCUCUGUUUCCGUUUCCGCUUCGUGCGGCAGUUGCAAUUUCGACU-GCAGUUGCAAUGGCAAUCUUUCA-UUAUUUAUGAU .(((((.....)))))(((..(((..(......(((.....)))(((((((......)))))-)).)..)))..)))......(((-(.....)))). ( -26.00) >consensus AUGGAGUAAGAUGUCAGUUGCACUU_GCAUUUGCAC______CUGCAGUUGCAAUCGCCAUU_CCCGUCGCAGUUGCAAUCUCGCAUUUAUUUAUUGU .(((....((((((.((......)).))))))))).........((((((((...((........))..))))))))..................... ( -8.36 = -8.12 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:48 2006