Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,085,160 – 19,085,268 |
Length | 108 |
Max. P | 0.669203 |
Location | 19,085,160 – 19,085,268 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 82.17 |
Mean single sequence MFE | -34.48 |
Consensus MFE | -26.12 |
Energy contribution | -26.28 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.76 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669203 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19085160 108 + 22407834 --CGAACUGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA-GU----CAUGGAUAUGGUCGGAUAUGGUAACGGGA --(((((((((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..))))-))----(((....))).)))............... ( -33.00) >DroPse_CAF1 10709 103 + 1 --GCAGCGGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA-GC----CAUGGAUACGGACGGAUGUGGCUG----- --......(((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..)))(-((----((((....(....)..))))))).----- ( -34.60) >DroEre_CAF1 6693 106 + 1 --CAAACUGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA-GU----CAUGGAUAUGGGCGGAUAUGG--ACGGGA --...((((((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..))))-))----..((..((((......)))).--.))... ( -33.50) >DroWil_CAF1 13564 94 + 1 --UCGGCGAGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGAGCGGCAU----CAUGCGAAUGG----AUG----------- --..............(((((((((.((((...(((((((.......)))))))...)).....(((.((((......))))----)))))))))))----)))----------- ( -28.20) >DroAna_CAF1 8351 114 + 1 UUCCAGCUGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGUGCCA-GCACAGCACGGAUCUGGAUGGAUAUUGUCGUGGGG ..((.(((((((..(((((.(((((((.((...(((((((.......)))))))...)).))))))).))))).)))))-))....(((((((((....))))....))))))). ( -43.00) >DroPer_CAF1 8335 103 + 1 --GCAGCGGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA-GC----CAUGGAUACGGACGGAUGUGGCUG----- --......(((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..)))(-((----((((....(....)..))))))).----- ( -34.60) >consensus __CCAGCGGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA_GC____CAUGGAUAUGGACGGAUAUGG__G_____ ........(((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..)))..................................... (-26.12 = -26.28 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:50 2006