Locus 6828

Sequence ID 2L_DroMel_CAF1
Location 19,082,577 – 19,082,667
Length 90
Max. P 0.554313
window10892

overview

Window 2

Location 19,082,577 – 19,082,667
Length 90
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 69.94
Mean single sequence MFE -12.64
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.75
Structure conservation index -0.00
SVM decision value 0.04
SVM RNA-class probability 0.554313
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19082577 90 + 22407834
UCCCAAAAAUUUGUGACAC--UGUUAUUACAGGUCAAGCAAAAGCAUUUAAAGUUUAUUUAAAUUGAAUAAACCCUAACAAAUACAGUGCAU
............(((.(((--(((......(((....((....)).......((((((((.....))))))))))).......))))))))) ( -16.92)
>DroSec_CAF1 4837 76 + 1
--CCAAAAAUAUGUGACAC--UGUUCUUGCA-GUCAAAUAAAACCAUUU-----------AAAUUGAAUAAACCCUAACAAAUACAGUUUGU
--.((((....((((...(--(((....)))-)((((.((((....)))-----------)..))))...............)))).)))). (  -6.40)
>DroSim_CAF1 4785 87 + 1
--CCAAAAAUAUGUGACCC--UGUUCUUGCA-GUCAAAUAAAACCAUUUAAAGUUUAUUUAAAUUGAAUAAACCCUAACAAAUACGGUUUAU
--.......(((.((((..--(((....)))-)))).)))...(.(((((((.....))))))).).(((((((.((.....)).))))))) ( -10.90)
>DroEre_CAF1 4612 80 + 1
UCCCCAAAAUAUCCGACACAU------------UGUAAUUAAGCCAUUUAGAGUUUAGUUAAAUUGCAUGCAUACUAACAAAUACAGUGCUU
..................(((------------((((..(((((........)))))((((...((....))...))))...)))))))... ( -10.30)
>DroYak_CAF1 6589 90 + 1
UGCCAAAAAUAUUCGACACACUGAUAUA-AA-CUGUAAUAAAACCAUUUGCAGUUUAUGAAAAUUGAAUACAUUUUAACAAAUUCAGUGCUU
..................((((((((((-((-((((((.........))))))))))))....(((((.....))))).....))))))... ( -18.70)
>consensus
U_CCAAAAAUAUGUGACAC__UGUUAUU_CA_GUCAAAUAAAACCAUUUAAAGUUUAUUUAAAUUGAAUAAACCCUAACAAAUACAGUGCAU
............................................................................................ (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:49 2006