Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,081,923 – 19,082,018 |
Length | 95 |
Max. P | 0.785264 |
Location | 19,081,923 – 19,082,018 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 75.57 |
Mean single sequence MFE | -27.82 |
Consensus MFE | -16.26 |
Energy contribution | -16.98 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.06 |
Mean z-score | -1.64 |
Structure conservation index | 0.58 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19081923 95 + 22407834 AGGGUGCAAUGGGGGUUGCGGGCACGCCCUGUAAAAUGGCCAGCCUGCAGC-AAAACAGCUAAAUAACAGAUGAAACAAAAACUCGGCUAUAUAUC .((((....((...(((((((((..(((.(.....).)))..)))))))))-....((.((.......)).))...))...))))........... ( -22.90) >DroSec_CAF1 4219 95 + 1 AGGGUGCACUGGGGGUUGCGGGCACGCCCUGUAAAAUGGCCAGCCUGCAGC-AAAACAGCAAAAUAGCAGAUGAAACAAAAACUCGGCUAUAUCUC .(((((..(((((.(((((((((..(((.(.....).)))..)))))))))-......((......))..............)))))...))))). ( -28.40) >DroSim_CAF1 4154 95 + 1 AGGGUGCACUGGGGGUUGCGGGCACGCCCUGUAAAAUGGCCAGCCUGCAGC-AAAACAGCUAAAUAGCAGAUGAAACAAAAACUCGGCUAUAUCUC .(((((..(((((.(((((((((..(((.(.....).)))..)))))))))-......(((....)))..............)))))...))))). ( -29.30) >DroEre_CAF1 4052 79 + 1 AGGGUGCACUGGGGGUUGCGGGCACGCCCUUUAAAAUGGGCAGCCUGCAGCUAAAACAGC---------GCUGCAACAAAAACUGAGC-------- ...((((.(((..((((((((((..((((........)))).))))))))))....))).---------)).))..............-------- ( -33.40) >DroYak_CAF1 5914 79 + 1 AGGGCGCACUGGGGGUUGCGGGCACGCCCUGUAAAAUGGACAGCCUGCAGCUAAAACAGC---------GCUGGAACAAAAGCUCAGC-------- .((((((.(((..((((((((((..(.((........)).).))))))))))....))).---------))((...))...))))...-------- ( -29.00) >DroPer_CAF1 5559 75 + 1 GUGAUGCUUUGGGGGUGGCGGACACGCCCUGCAAAAUGGCUCGCCUGCAGCAGAAACAGCGA--CAGCAGCAGCAAC------------------- ....(((...(((.(((.....))).))).))).....(((.(((((..((.......))..--)))..)))))...------------------- ( -23.90) >consensus AGGGUGCACUGGGGGUUGCGGGCACGCCCUGUAAAAUGGCCAGCCUGCAGC_AAAACAGC_A__UAGCAGAUGAAACAAAAACUCGGC________ ........(((...(((((((((..(((.(.....).)))..))))))))).....)))..................................... (-16.26 = -16.98 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:48 2006