Locus 6826

Sequence ID 2L_DroMel_CAF1
Location 19,077,247 – 19,077,355
Length 108
Max. P 0.730490
window10890

overview

Window 0

Location 19,077,247 – 19,077,355
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.48
Mean single sequence MFE -32.72
Consensus MFE -22.67
Energy contribution -22.20
Covariance contribution -0.47
Combinations/Pair 1.40
Mean z-score -1.57
Structure conservation index 0.69
SVM decision value 0.42
SVM RNA-class probability 0.730490
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19077247 108 - 22407834
------------UUAGGCCUCUAUCUGGAUGGCUCGUUGGACGGCGAUCAGCCGAAUAAGCGUCCGCGCACCACGAUCACCGCCAAGCAGCUGGAGACCCUGAAAACGGCCUACAAUAAC
------------.((((((......(((.(((.((((.((.((((.....)))).....(((....))).))))))...))))))..(((..(....).))).....))))))....... ( -36.60)
>DroGri_CAF1 4160 111 - 1
--------AU-UGCAGGUCUCUACUUGGAUGGCUCGCUGGAUGGGGAUCAGCCGAAUAAGCGACCUCGUACCACGAUUACCGCCAAGCAGCUGGAGACACUGAAAACCGCAUAUAACAAC
--------..-..(((((((((((((((.(((.(((.(((((((((.((.((.......)))))))))).))))))...))))))))....))))))).))).................. ( -36.30)
>DroWil_CAF1 2038 119 - 1
UUUCAACUAU-CAUAGGUCUCUAUUUGGAUGGUUCAUUGGAUGGGGAUCAACCUAAUAAGCGUCCGCGUACCACAAUAACCGCCAAACAGUUGGAAACUCUGAAAACCGCCUACAAUAAU
.......(((-..(((((.....(((((.(((((...((((((.((((.............)))).))).)))....))))))))))(((..(....).)))......)))))..))).. ( -28.42)
>DroYak_CAF1 1128 108 - 1
------------UUAGGCCUCUAUCUGGACGGCUCCUUGGACGGCGAUCAGCCGAAUAAGCGACCCCGCACCACGAUCACCGCCAAACAGCUGGAGACCCUGAAAACCGCCUACAAUAAC
------------.(((((.....((.((.(((((..((((.(((.(((((......)..(((....))).....)))).)))))))..))))).....)).)).....)))))....... ( -31.00)
>DroMoj_CAF1 4342 112 - 1
--------UUGUGCAGGUCUCUACUUGGACGGCUCGCUGGAUGGGGAUCAGCCCAAUAAGCGGCCACGCACCACAAUCACAGCCAAGCAGCUAGAGACACUGAAAACCGCAUACAAUAAC
--------.(((((((((((((((((((.((((.((((...((((......))))...)))))))..(.....).......))))))....))))))).))).....))))......... ( -35.70)
>DroAna_CAF1 948 108 - 1
------------ACAGGUCUUUAUCUGGAUGGCUCGCUGGAUGGAGACCAGCCCAAUAAGAGACCCCGCACAACGAUCACCGCCAAGCAGCUGGAGACCUUGAAAACCGCCUACAACAAC
------------..(((((((((.(((..((((..(((((.......)))))..............((.....))......))))..))).))))))))).................... ( -28.30)
>consensus
____________ACAGGUCUCUAUCUGGAUGGCUCGCUGGAUGGGGAUCAGCCGAAUAAGCGACCCCGCACCACGAUCACCGCCAAGCAGCUGGAGACCCUGAAAACCGCCUACAAUAAC
.............((((((((((.(((..((((..(((((.......))))).......(((....)))............))))..))).))))))).))).................. (-22.67 = -22.20 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:47 2006