Locus 6825

Sequence ID 2L_DroMel_CAF1
Location 19,076,249 – 19,076,366
Length 117
Max. P 0.735598
window10889

overview

Window 9

Location 19,076,249 – 19,076,366
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 83.19
Mean single sequence MFE -34.25
Consensus MFE -30.80
Energy contribution -29.37
Covariance contribution -1.44
Combinations/Pair 1.23
Mean z-score -1.21
Structure conservation index 0.90
SVM decision value 0.44
SVM RNA-class probability 0.735598
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19076249 117 - 22407834
AACAACGUCUCCGAUCUGAGCAACGAUUCCAGUCCCGAUCAGGGAUACCCCGACUUUCCGCCCAGCCCCGACUCCUGGCUGGGCGAUUCGGGCAGCACCAACACGACCAGCGCCAAC
.....(((.......(((.............(((((.....)))))..(((((.....(((((((((.........)))))))))..)))))))).......)))............ ( -36.44)
>DroWil_CAF1 145 117 - 1
AACAAUGUAUCGGAUUUAAGUAAUGAUUCCAGUCCCGAUCAGGGCUAUCCAGAUUUUCCACCCAGUCCUGACUCUUGGCUGGGUGACUCUGGGAGUACGAAUAAUACAAGCAACAAC
.....(((((.(((.(((.....))).)))(((((......))))).((((((.....(((((((.((........)))))))))..))))))..........)))))......... ( -33.20)
>DroYak_CAF1 76 117 - 1
AACAACGUCUCCGAUCUGAGCAACGAUUCCAGUCCCGACCAGGGAUACCCCGACUUUCCGCCCAGUCCCGACUCCUGGUUGGGCGAUUCGGGCAGCACCAACACGACCAGCGUCAAC
............((((((..(..........(((((.....)))))..(((((.....(((((((.((.(....).)))))))))..)))))............)..))).)))... ( -33.10)
>consensus
AACAACGUCUCCGAUCUGAGCAACGAUUCCAGUCCCGAUCAGGGAUACCCCGACUUUCCGCCCAGUCCCGACUCCUGGCUGGGCGAUUCGGGCAGCACCAACACGACCAGCGACAAC
......(((......................(((((.....)))))..(((((.....(((((((((.........)))))))))..)))))............))).......... (-30.80 = -29.37 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:46 2006