Locus 6824

Sequence ID 2L_DroMel_CAF1
Location 19,075,249 – 19,075,369
Length 120
Max. P 0.984576
window10888

overview

Window 8

Location 19,075,249 – 19,075,369
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.46
Mean single sequence MFE -15.72
Consensus MFE -14.80
Energy contribution -14.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.94
SVM decision value 1.98
SVM RNA-class probability 0.984576
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19075249 120 - 22407834
UUGCAUAGGAGAAAUAUCAAUUACGAAAACGUGAUGUCGUAUUUAUAUCUAACGAAUAAAAGAAUUACAAAAACCAAAAAUAUUUCAACCAAAUAGAAAUGUCAGUAAAAAAAAACAGCA
.(((...((..((((((..((((((....))))))...))))))...((....))..................))....(((((((.........)))))))...............))) ( -15.30)
>DroSec_CAF1 8162 120 - 1
UUGCAUAGGAGAAAUAUCAAUUACGAAAACGUGAUGUCGUAUUUAUAUCUAACGAAUAAAAGAAUUACAAAAACCAAAAAUAUUUCAACCAAAUAGAAAUGUCAGUAAAAAAAAGCAGCA
((((...((..((((((..((((((....))))))...))))))...((....))..................))....(((((((.........)))))))............)))).. ( -16.20)
>DroSim_CAF1 8171 120 - 1
UUGCAUAGGAGAAAUAUCAAUUACGAAAACGUGAUGUCGUAUUUAUAUCUAACGAAUAAAAGAAUUACAAAAACCAAAAAUAUUUCAACCAAAUAGAAAUGUCAGUAAAAAAAAGCAGCA
((((...((..((((((..((((((....))))))...))))))...((....))..................))....(((((((.........)))))))............)))).. ( -16.20)
>DroEre_CAF1 7552 116 - 1
UUGCAUAGGAGAAAUAUCAAUUACGAAAACGUGAUGUCGUAUUUAUAUCUAACGAAUAAAAGAAUUACAAAAACCAAAAAUAUUUCAACCAAAUAGAAAUGUCAGUAAAA----ACAGCA
.(((...((..((((((..((((((....))))))...))))))...((....))..................))....(((((((.........)))))))........----...))) ( -15.30)
>DroYak_CAF1 7844 116 - 1
UUGCAUAGGAGAAAUAUCAAUUACGAAAACGUGAUGUCGUAUUUAUAUCUAACGAAUAAAAGAAUUACAAAAACCAAAAAUAUUUCAACCAAAUAGAAAUGUCAGUAAAA----ACAGCA
.(((...((..((((((..((((((....))))))...))))))...((....))..................))....(((((((.........)))))))........----...))) ( -15.30)
>DroAna_CAF1 7124 110 - 1
UUGCAUAGGAGAAAUAUCAAUUACGAAAACGUGAUGUCGUAUUUAUAUCUAAAGAAAACCA--AAAACAAAAA-CAAAAAUAUUUCAACCA--UAGAAAUGUCAGUAAUG-----AAGCA
.(((...(((.((((((..((((((....))))))...))))))...)))...........--..........-......((((((.....--..))))))(((....))-----).))) ( -16.00)
>consensus
UUGCAUAGGAGAAAUAUCAAUUACGAAAACGUGAUGUCGUAUUUAUAUCUAACGAAUAAAAGAAUUACAAAAACCAAAAAUAUUUCAACCAAAUAGAAAUGUCAGUAAAA____ACAGCA
.(((...(((.((((((..((((((....))))))...))))))...))).............................(((((((.........)))))))...............))) (-14.80 = -14.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:45 2006