Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,066,132 – 19,066,231 |
Length | 99 |
Max. P | 0.681002 |
Location | 19,066,132 – 19,066,231 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.55 |
Mean single sequence MFE | -24.37 |
Consensus MFE | -17.10 |
Energy contribution | -17.27 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.70 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19066132 99 + 22407834 AACUCC---AGCUCCUGCCAAACCACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU--AC--CGGCAUCCU--CAUCGGC ......---.(((..((((.......((((((......(((...))).....))))))..........(((....)))...)))--).--.))).....--....... ( -21.10) >DroVir_CAF1 6659 94 + 1 UCUUGU---UGCUCCUGCCAAACUGCCAGCUGAUUUGCUUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGAC--AUUACGGGACCCA--------- ((((((---((.((.(((((....((((((......)).))))...........(((((......)))))....)))))..)))--)..))))))....--------- ( -23.10) >DroSec_CAF1 5155 99 + 1 AACUCC---AGCUCCUGCCAAACCACCAGCUGAUCACAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU--AU--CGGCAUCCU--CAUCGGC ......---.......(((......(((.(((....))))))............(((((..((.....(((....)))...)).--.)--)))).....--....))) ( -21.70) >DroSim_CAF1 5107 99 + 1 AACUCC---AGCUCCUGCCAAACCACCAGCUGAUCACAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU--AC--CGGCAUCCU--CAUCGGC ......---.(((..((((.......((((((......(((...))).....))))))..........(((....)))...)))--).--.))).....--....... ( -21.10) >DroYak_CAF1 5070 88 + 1 AGCUCC---AGCUCCUGCCAAACCACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU--AC--CGGCA------------- (((...---.)))...(((..(((..((((((......(((...))).....))))))..........(((....)))...)))--..--.))).------------- ( -21.50) >DroAna_CAF1 5157 104 + 1 --GUCGGGAAGGUCUUGCCAAACCACCAGCUGAUCCGAGAGGAUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGGACAC--CGGCAACCGGCAACCGGC --(((((....((((((.........((((((((((....)))))........)))))..........(((....)))..)))))).)--))))..((((...)))). ( -37.70) >consensus AACUCC___AGCUCCUGCCAAACCACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU__AC__CGGCAUCCU__CAUCGGC ...............((((.......((((((....................))))))..........(((....))).............))))............. (-17.10 = -17.27 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:40 2006