Locus 6820

Sequence ID 2L_DroMel_CAF1
Location 19,055,767 – 19,055,867
Length 100
Max. P 0.985234
window10881

overview

Window 1

Location 19,055,767 – 19,055,867
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -29.48
Consensus MFE -27.46
Energy contribution -27.70
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 0.93
SVM decision value 2.00
SVM RNA-class probability 0.985234
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19055767 100 + 22407834
GGCAACUACAAUGUGAGUUGACUCCACUCCGGCUGUCGGUAUCCGACAUCCGGCUUCCGGUACUCCAUAUCCGGCUGGCAUGCCUGUACAUCUUCCCCAA
((((.......((.(((....)))))...(((.((((((...)))))).)))(((.((((..........))))..))).))))................ ( -30.30)
>DroSec_CAF1 7783 100 + 1
GGCAACUACAAUGUGAGUUGACUCCACUCCGGCUGUCGGUAACCGACAUCCGGCUUCCGGUACUCCAUAUCCGGCUGGCAUGCCUGUACAUCUUCCCCAA
((((.......((.(((....)))))...(((.((((((...)))))).)))(((.((((..........))))..))).))))................ ( -30.30)
>DroSim_CAF1 7395 100 + 1
GGCAACUACAAUGUGAGUUGACUCCACUCCGGCUGUCGGUAACCGACAUCCGGCUUCCGGUACUCCAUAUCCGGCUGGCAUGCCUGUACAUCUUCCCCAA
((((.......((.(((....)))))...(((.((((((...)))))).)))(((.((((..........))))..))).))))................ ( -30.30)
>DroEre_CAF1 8048 100 + 1
GGCAACUAUAACGUGAGUCAACUCCACUCCGGCUGUCGGUAUCCGACAUCCGGCUUCCGGUAUUUCAUAUCCGGCUGGCAUGGCUGUACAUCUUCCCCAA
(....)......((((((((.........(((.((((((...)))))).)))(((.((((..........))))..))).))))).)))........... ( -29.40)
>DroYak_CAF1 7908 100 + 1
GGCAACUACAACGUGAGUCGACUCCACUCCGUCUGUCGGUAUCCGACAUCCGGCUUCCGGUAUUUCAUAUCCGGCUGGUAUGCCUGUACAUCUUCCCCAA
((((((((....(((((....)).))).(((..((((((...))))))..)))...((((..........)))).)))).))))................ ( -27.10)
>consensus
GGCAACUACAAUGUGAGUUGACUCCACUCCGGCUGUCGGUAUCCGACAUCCGGCUUCCGGUACUCCAUAUCCGGCUGGCAUGCCUGUACAUCUUCCCCAA
((((........(((((....)).)))..(((.((((((...)))))).)))(((.((((..........))))..))).))))................ (-27.46 = -27.70 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:39 2006