Locus 6819

Sequence ID 2L_DroMel_CAF1
Location 19,051,387 – 19,051,484
Length 97
Max. P 0.574649
window10880

overview

Window 0

Location 19,051,387 – 19,051,484
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 87.90
Mean single sequence MFE -41.07
Consensus MFE -33.18
Energy contribution -33.43
Covariance contribution 0.25
Combinations/Pair 1.17
Mean z-score -1.95
Structure conservation index 0.81
SVM decision value 0.08
SVM RNA-class probability 0.574649
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19051387 97 - 22407834
GGGAAAGAUCAUGGGUAUGUUGCCCUGCGGCGUCUGCAGUACCUGCACCAUUUGAGGAUGUUGCGGGUGCGGGGGCGCCUGCUGCGGUCCUGGUAUU
((((..(.....((((.....)))).(((((((((.(.(((((((((.((((....)))).)))))))))).))))))).))..)..))))...... ( -44.50)
>DroSec_CAF1 3394 97 - 1
GGGAAAGAUCAUGGGGAUAUUGCCCUGCGGCGUCUGCAAUACCUGCACCAUUUGAGGAUGUUGCGGGUGCGGGGGCGCCUGCUGCGGUCCUGGAAUU
((((..(.....((((......))))(((((((((.(..((((((((.((((....)))).)))))))).).))))))).))..)..))))...... ( -40.10)
>DroSim_CAF1 3393 97 - 1
GGGAAAGAUCAUGGGGAUAUUGCCCUGCGGCGUCUGCAAUACCUGCACCAUUUGAGGAUGUUGCGGGUGCGGGGGCGCCUGCUGCGGUCCUGGAAUU
((((..(.....((((......))))(((((((((.(..((((((((.((((....)))).)))))))).).))))))).))..)..))))...... ( -40.10)
>DroEre_CAF1 3473 97 - 1
GGGAAAGAUCAUGGGGAUGUUGCCCUGCGGCGUCUGCAGUACCUGCACCAUUUGAGGAUGUUGCGGGUGCGAUGGUGCUUGCUGCGGUCCUGCCAUU
.((...((((..((((......))))((((((..(((.(((((((((.((((....)))).)))))))))....)))..))))))))))...))... ( -41.30)
>DroYak_CAF1 3404 97 - 1
GGGAAAGAUCAUGGGGAUGUUACCCUGCGGCGUCUGUAGUACCUGCACCAUUUGAGGAUGUUGCGGGUGCGGUGGCGCCUGCUGCGGCCCUGUCAUU
(((.........((((......))))((((((((....(((((((((.((((....)))).)))))))))...)))))).)).....)))....... ( -41.10)
>DroAna_CAF1 3254 97 - 1
AGAAAAUAUCAUGGGAAUAUUUCCCUGGGGCGUCUGCAGCACCUGCACCAUCUGGGGAUGCUGAGGAUGCGGCGGUGGUUGCUGCGGAGCCUGCAUC
.........((.((((.....))))))((((.((((((((((((((..(((((.((....))..)))))..)))..)).)))))))))))))..... ( -39.30)
>consensus
GGGAAAGAUCAUGGGGAUAUUGCCCUGCGGCGUCUGCAGUACCUGCACCAUUUGAGGAUGUUGCGGGUGCGGGGGCGCCUGCUGCGGUCCUGGCAUU
......((((..(((.......))).((((((..(((.(((((((((.((((....)))).)))))))))....)))..))))))))))........ (-33.18 = -33.43 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:38 2006