Locus 6818

Sequence ID 2L_DroMel_CAF1
Location 19,050,327 – 19,050,418
Length 91
Max. P 0.916348
window10879

overview

Window 9

Location 19,050,327 – 19,050,418
Length 91
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.80
Mean single sequence MFE -40.82
Consensus MFE -24.02
Energy contribution -25.91
Covariance contribution 1.89
Combinations/Pair 1.12
Mean z-score -2.25
Structure conservation index 0.59
SVM decision value 1.11
SVM RNA-class probability 0.916348
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19050327 91 - 22407834
GCUUUUCCUGCUGCUC-------UGCUGCCCACAACUACAACUAG------UCGCGUAUAUUUUGCGCGUUAGCGGGGUAGG---GGGUGCGCGGGCGGCGGGUGGC
(((...((((((((.(-------((((((((....((((..((((------.((((((.....))))))))))....)))).---))))).)))))))))))).))) ( -46.60)
>DroPse_CAF1 2333 98 - 1
UUUUCGCCUGCUGCUUCCACAAAGGCUGCCCA---CUACAACUAGUUGUCGUCGCAUAUAU-UUGCGCGUUAGCGGGUGGAGGACGGGUGCUC-----ACGGGUAGC
....((((((...(((((((...((....)).---.........((((.((.((((.....-.)))))).))))..))))))).))))))...-----......... ( -30.20)
>DroSim_CAF1 2336 91 - 1
GCUUUUCCUGCUGCUC-------UGCUGCCCACAACUACAACUAG------UCGCGUAUAUUUUGCGCGUUAGCAGGGUAGG---GGGUGCGCGGGCGGCGGGUGGC
(((...((((((((.(-------((((((((....((((..((((------.((((((.....))))))))))....)))).---))))).)))))))))))).))) ( -46.60)
>DroEre_CAF1 2415 91 - 1
GCUUUUCCUGCUGCUC-------UGCUGCCCACAACUACAACUAG------UCGCGUAUAUUUUGCGCGUUAGCGGGUUAGG---GGGUGCGCGGGCGGCGGGUGGC
(((...((((((((.(-------((((((((..((((....((((------.((((((.....))))))))))..))))...---))))).)))))))))))).))) ( -44.70)
>DroYak_CAF1 2346 91 - 1
GCUUUUCCUGCUGCUC-------UGCUGCCCACAACUACAACUAG------UCGCGUAUAUUUUGCGCGUUAGCGGGGUAGG---GGGUGCGCGGGCGGCGGGUGGC
(((...((((((((.(-------((((((((....((((..((((------.((((((.....))))))))))....)))).---))))).)))))))))))).))) ( -46.60)
>DroPer_CAF1 2333 98 - 1
UUUUCGCCUGCUGCUUCCACAAAGGCUGCCCA---CUACAACUAGUUGUCGUCGCAUAUAU-UUGCGCGUUAGCGGGUGGAGGACGGGUGCUC-----ACGGGUAGC
....((((((...(((((((...((....)).---.........((((.((.((((.....-.)))))).))))..))))))).))))))...-----......... ( -30.20)
>consensus
GCUUUUCCUGCUGCUC_______UGCUGCCCACAACUACAACUAG______UCGCGUAUAUUUUGCGCGUUAGCGGGGUAGG___GGGUGCGCGGGCGGCGGGUGGC
(((...((((((((((.......(((.((((....((.(..((((.......((((((.....))))))))))..)...))....))))))).)))))))))).))) (-24.02 = -25.91 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:37 2006