Locus 6815

Sequence ID 2L_DroMel_CAF1
Location 19,042,793 – 19,042,907
Length 114
Max. P 0.525695
window10874

overview

Window 4

Location 19,042,793 – 19,042,907
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 81.93
Mean single sequence MFE -41.17
Consensus MFE -30.27
Energy contribution -30.67
Covariance contribution 0.39
Combinations/Pair 1.45
Mean z-score -1.28
Structure conservation index 0.74
SVM decision value -0.02
SVM RNA-class probability 0.525695
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19042793 114 + 22407834
CCGUGACCCUAGUCCUGCUCGAAACCGCGCCAGCCACGUGCUCUAUAUCACCAAUUUGGUACGCCCCUUCACAGUGCUGCAGCUGAAAGGCCUGCUGGCGCGGACGGGAAAGAU
(((((((....)))..........((((((((((..((((((..((.......))..))))))..((((..((((......)))).))))...))))))))))))))....... ( -41.00)
>DroVir_CAF1 10803 114 + 1
CCGCUCACCAAGUCCAGCGCGCAAUCGUGCCAGCCAUGUGCUCUUCAUUACCAAUCUGGUGCGUCCGUUUACUGUGCUGCAGCUCAAGGGGCUGCUGGCGCGUACGGGCAAGAU
.((((..........))))....((((..((((....(((........)))....))))..)((((((....((((((((((((.....)))))).)))))).))))))..))) ( -40.20)
>DroGri_CAF1 11941 114 + 1
CCGCUCUCCCAGUCCAGCGCGCAAUCGGGCCAGCCACGUUCUAUUUAUUACCAAUCUGGUGCGUCCCUUUACGGUGCUGCAGCUAAAAGGACUGCUGGCGCGAACUGGCAAGAU
....(((.(((((...(....)..(((.((((((...(((((.......(((.....)))(((..((.....))..).)).......))))).)))))).))))))))..))). ( -33.90)
>DroMoj_CAF1 10454 114 + 1
CCGCUCACCUAGCCCGGCCCGCAAUCGUGCCAGCCAUGUGCUCUUCAUUACCAAUUUGGUGCGGCCAUUUACGGUGCUGCAGCUGAAGGGUCUGUUGGCGAGAACGGGCAAGAU
........((.(((((((.((....)).))).((((...((((((((..(((.....)))((((((.......).)))))...))))))))....))))......)))).)).. ( -40.90)
>DroAna_CAF1 11328 114 + 1
CCGUUCCCCCAGUCCAGCUCGUAACCGCGCCAGCCACGUGCUUUACAUAACCAACCUGGUUCGGCCCUUCACCGUUAUGCAGUUAAAGGGCCUGCUGGCGCGGACGGGCAAGAU
...........(((..((((((..((((((((((..............((((.....)))).(((((((.((.(.....).))..))))))).))))))))))))))))..))) ( -47.30)
>DroPer_CAF1 12061 114 + 1
CCGCUCACCGAGUCCAGCCCGCAAUCGUUCCAGUCACGUGCUCUACAUAACCAAUUUGGUGCGUCCCUUCACUGUGCUCCAGCUGAAGGGGCUGCUGGCACGGACGGGCAAGAU
..((((...))))...((((((....))....(((.((((((.......(((.....)))((((((((((((((.....))).))))))))).)).)))))))))))))..... ( -43.70)
>consensus
CCGCUCACCCAGUCCAGCCCGCAAUCGUGCCAGCCACGUGCUCUACAUUACCAAUCUGGUGCGUCCCUUCACGGUGCUGCAGCUGAAGGGCCUGCUGGCGCGGACGGGCAAGAU
................(((((...((((((((((..............((((.....)))).((((.(((((.(.....).).)))).)))).)))))))))).)))))..... (-30.27 = -30.67 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:33 2006