Locus 6814

Sequence ID 2L_DroMel_CAF1
Location 19,042,057 – 19,042,150
Length 93
Max. P 0.892553
window10873

overview

Window 3

Location 19,042,057 – 19,042,150
Length 93
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 78.35
Mean single sequence MFE -25.12
Consensus MFE -15.74
Energy contribution -18.05
Covariance contribution 2.31
Combinations/Pair 1.20
Mean z-score -1.94
Structure conservation index 0.63
SVM decision value 0.97
SVM RNA-class probability 0.892553
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19042057 93 + 22407834
AGCCAGAACAAGAGGUAAAGGUUCCUUCUCCUUC---------------CAGCAAGGAUGAGGAACAUCUAAAAACGACUAGUGAUGUAUUAGACAUUCAGACAGAAG
.(((.........)))....(((((((.(((((.---------------....))))).))))))).(((((..(((.(....).))).))))).............. ( -18.80)
>DroPse_CAF1 11052 108 + 1
UUCACAUUCAAGAGGUAAAAGUUCCUUCUCCUUCGAUUAGCCUAACAGCAAGUAAGGAGGAGGAACAUCUAAAAACAUCCAGUGAUGUAUUAGACAUUCAAACAGAGG
...........(((......(((((((((((((..(((.((......)).)))))))))))))))).(((((..(((((....))))).)))))..)))......... ( -29.50)
>DroWil_CAF1 10783 108 + 1
AGCCAACAGAAGAGGUAAAAGUUCCAUCUCCUUCAAUUAGCUUAACAGCCAAUGCGGAUCAGGAGCAACUAAAAACUUCAAGCGAUGUAUUAGACAUUCAGACAGAAG
.(((.........)))....(((((...(((....(((.(((....))).)))..)))...))))).........((((...((((((.....)))))..)...)))) ( -16.80)
>DroMoj_CAF1 9775 105 + 1
CCGCGGAGGAAGAGGUAAAAGUUGCGUCUUCUUU---AAGCUUAACAGCAAGUAAGGAUGAAGUACAUCUAAAAACCACAAGCGAUGUAUUAGACAUUCAAACAGAGG
((((.((((((((.(((.....))).))))))))---..(((....)))..))..(((((.((((((((..............))))))))...))))).......)) ( -24.54)
>DroAna_CAF1 10565 108 + 1
AUCAAGAGCAAGAGGUAACAGUUCCUUCUCCUUCAGUUAGCCUAACGGCCAGCAAGGAUGAGGAACAUCUAAAAACGUCAAGCGAUGUAUUAGACAUUCAGACAGAAG
...........(((......(((((((.(((((..(((.(((....))).)))))))).))))))).(((((..(((((....))))).)))))..)))......... ( -31.60)
>DroPer_CAF1 11259 108 + 1
UUCACAUUCAAGAGGUAAAAGUUCCUUCUCCUUCGAUUAGCCUAACAGCAAGUAAGGAGGAGGAACAUCUAAAAACAUCCAGUGAUGUAUUAGACAUUCAAACAGAGG
...........(((......(((((((((((((..(((.((......)).)))))))))))))))).(((((..(((((....))))).)))))..)))......... ( -29.50)
>consensus
AUCAAAAACAAGAGGUAAAAGUUCCUUCUCCUUC_AUUAGCCUAACAGCAAGUAAGGAUGAGGAACAUCUAAAAACAUCAAGCGAUGUAUUAGACAUUCAAACAGAAG
...........(((......(((((((.(((((..(((.((......)).)))))))).))))))).(((((..(((((....))))).)))))..)))......... (-15.74 = -18.05 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:32 2006