| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,037,849 – 19,037,956 |
| Length | 107 |
| Max. P | 0.601854 |
| Location | 19,037,849 – 19,037,956 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 73.50 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -15.71 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19037849 107 - 22407834 CUGCUCCCAGGAUUACGACCAGUGCCAGCUUUUGGUACAACUGGAGCUUACUGCACUGGUAAUCAGCCACUUGUUUGGCCAUUUUGUCCUUUACUUUAGU---UUCGCGU ..((....(((((....((((((((.(((((..(......)..)))))....)))))))).....((((......))))......)))))..((....))---...)).. ( -28.70) >DroSec_CAF1 6131 107 - 1 CUGCUCCUAGGAUUACGACCAGUGCCAGCUUCUGGUACAACUGGAGCUUACUGCACUGGAAAUCAGCCACUUGUUUGGCCAUUUUGUCCUUUACUUUAGU---UUCGCGU (((.....(((((.....(((((((.((((((.(......).))))))....)))))))......((((......))))......)))))......))).---....... ( -28.70) >DroSim_CAF1 4121 107 - 1 CUGCUCCUAGGAUUACGACCAGUGCCAGCUUCUGGUACAACUGGAGCUUACUGCACUGGAAAUCAGCCACUUGUUUGGCCAUUUUGUCCUUUACUUUAGU---UUCGCGU (((.....(((((.....(((((((.((((((.(......).))))))....)))))))......((((......))))......)))))......))).---....... ( -28.70) >DroWil_CAF1 6657 110 - 1 UCACACCAAGUAUCAAGCCCAAUGCAAGUUUCUGAUAGAAUUGCAGCUUACUCGGCUCGAAUUCAGCCAAUUGUUUGGCCAUUAUAACUUAAAUAAUAAUGAAAACGCGU .....((.((((...(((....(((((..(((.....))))))))))))))).))(.((......(((((....)))))((((((..........))))))....)).). ( -18.30) >DroAna_CAF1 6229 105 - 1 CCGCUCCUAGGAUAAUGGCCAGGGCCAGCUUCUGGUAAAACUGGACUUUGCUGGUCUGAAAAUCGGCCACUUGUUUGGCCAUCUUGAC-UAAGCUAUCUU---UUCUGG- ......((((((..(((((..((((((((.((..(.....)..))....)))))))).......(((((......)))))........-...)))))...---))))))- ( -35.30) >DroPer_CAF1 6732 97 - 1 UGCCACUGAGUAUAACGCCUAGUGCUAGCUUCUGGUAAAAUAGAAGCUUGCUGCUCUGGAAAUCGGCCAAGUGCUUGGCCAUUUUAAA-U---------A---UACGCGU ..............((((((((.((.((((((((......))))))))....)).)))).....((((((....))))))........-.---------.---...)))) ( -32.10) >consensus CUGCUCCUAGGAUUACGACCAGUGCCAGCUUCUGGUACAACUGGAGCUUACUGCACUGGAAAUCAGCCACUUGUUUGGCCAUUUUGACCUUUACUUUAGU___UUCGCGU .........(((......(((((((.((((((.(......).))))))....)))))))......((((......))))........................))).... (-15.71 = -15.80 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:31 2006