| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,034,494 – 19,034,614 |
| Length | 120 |
| Max. P | 0.546544 |
| Location | 19,034,494 – 19,034,614 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.72 |
| Mean single sequence MFE | -47.05 |
| Consensus MFE | -30.83 |
| Energy contribution | -30.58 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19034494 120 + 22407834 AGAGGAGUUGCAGCCGGUGGCGCCCAUGGUGAAGCCAAGCUUUUCCGUGGGCGACCGCGUCAAGGUUUGCCUAGAGGUUGACGCCCUAAUGAAAUUGCAGCAGGGCCAUGGCGGAUGGAA .......((.((.((.(((((((((((((.(((((...))))).))))))))).))))((((..(((.(((....))).)))(((((..((......))..)))))..)))))).)).)) ( -52.50) >DroVir_CAF1 2254 120 + 1 CGAGGAACAGCAGCCAAUCGUGUCCAUGGUCAAGCCAAGCUUCUCUGUGGGCGACCGUGUCAAGGUGUGCCUCGAGGUAGAUGCACUGAUGAAGCUACAGCAGGGACAUGGUGGCUGGAA ..........((((((.((((((((.(((.....)))((((((((.((((((((((.......))).))))((......))..))).)).)))))).......))))))))))))))... ( -47.00) >DroGri_CAF1 3098 120 + 1 CGAGGAGCAGCAACCAAUCGUGGCCAUGGUGAAGCCAAGCUUCUCGGUGGGCGAUCGUGUCAAGGUCUGCCUCGAGGUGGAUGCACUGAUGAAGUUACAGCAGGGUCAUGGUGGCUGGAA .......((((.....(((((((((.(((.....)))((((((((((((((((....))))...(((..((....))..))).)))))).)))))).......))))))))).))))... ( -45.80) >DroWil_CAF1 2881 120 + 1 AGAGGAACAGCAACCGGUAGCGCCAAUGGUGAAGCCAAGCUUCUCUGUUGGAGAUCGUGUCAAGGUGUGCCUGGAAGUGGAUGCCCUUAUGAAAUUACAACAAGGCCAUGGUGGUUGGAA .......((((.((((...((.(((((((.(((((...))))).)))))))...(((((....(((((.((.......)))))))..)))))............))..)))).))))... ( -34.30) >DroMoj_CAF1 1996 120 + 1 CGAGGAGCAGCAGCCCAUCGUGUCCAUGGUGAAGCCAAGCUUCUCUGUGGGCGAUCGCGUCAAAGUGUGCCUCGAGGGGGAGGCACUGAUAAAGCUGCAACAGGGACACGGUGGCUGGAA ..........(((((.(((((((((.....(((((...))))).((((.(((.(((((......))(((((((......))))))).)))...)))...))))))))))))))))))... ( -52.00) >DroAna_CAF1 2437 120 + 1 GGAGGAGCUCCAGCCAGUGGCACCCAUGGUGAAGCCAAGCUUCUCUGUGGGCGAUCGGGUCAAGGUGUGCCUGGAUGUGGAUGCCCUGAUGAAGCUGCAGCAGGGACACGGCGGUUGGAA ........(((((((.(((...(((.(((.....)))((((((((...(((((.(((.(((.(((....))).))).))).))))).)).))))))......))).)))...))))))). ( -50.70) >consensus CGAGGAGCAGCAGCCAAUCGCGCCCAUGGUGAAGCCAAGCUUCUCUGUGGGCGAUCGUGUCAAGGUGUGCCUCGAGGUGGAUGCACUGAUGAAGCUACAGCAGGGACAUGGUGGCUGGAA ..........(((((.....(((((((((.(((((...))))).)))))))))..........(.(((((((.(..((((...(......)...))))..).))).)))).))))))... (-30.83 = -30.58 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:30 2006