Locus 6811

Sequence ID 2L_DroMel_CAF1
Location 19,033,835 – 19,033,931
Length 96
Max. P 0.572075
window10870

overview

Window 0

Location 19,033,835 – 19,033,931
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 74.29
Mean single sequence MFE -18.49
Consensus MFE -15.20
Energy contribution -15.07
Covariance contribution -0.14
Combinations/Pair 1.25
Mean z-score -0.50
Structure conservation index 0.82
SVM decision value 0.08
SVM RNA-class probability 0.572075
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19033835 96 + 22407834
GACCAACUACCGUGUGGGCUACCAAAACCAGUACGACUUGAUAAUUGUAGAUAAUGCUCAAGUUGGUAAGUGACGAUAUUUAAGA-AAUCUAUUCAA
...((..((((((((((..........))).)))(((((((..((((....))))..)))))))))))..)).............-........... ( -16.90)
>DroVir_CAF1 1631 97 + 1
CACCAACUACAGAGUGGGCUAUCAAAAUCAAUACGAUCUGAUCAUUGUGGAUAAUGCACAAGUUGGUAAGUGAAACUAUCUAACGAGGGCUAUAAAA
.(((((((.((((.((.................)).)))).....((((.......)))))))))))........((.((....)).))........ ( -16.33)
>DroPse_CAF1 2237 89 + 1
CACCAACUACCGUGUGGGCUAUCAGAGUCAAUACGAUUUGAUAAUUGUGGAUAACGCUCAAGUUGGUAAGUGUG---CCU----C-CAUCCCUCAGA
.(((((((...((((...((((.(..(((((......)))))..).))))...))))...))))))).......---...----.-........... ( -20.00)
>DroMoj_CAF1 1385 80 + 1
CACCAACUACAGAGUGGGCUAUCAAAAUCAAUACGAUUUAAUCAUUGUGGAUAAUGCCCAAGUUGGUAAGUGAAUCGCUU-----------------
.(((((((......(((((.....(((((.....))))).(((......)))...))))))))))))(((((...)))))----------------- ( -19.20)
>DroAna_CAF1 1826 88 + 1
GACCAACUACCGUGUCGGCUAUCAGAAUCAGUACGACUUGAUUAUUGUAGAUAAUGCUCAAGUUGGUAAGUAG----AUU----A-GAUUACUUCAA
.(((((((...((((...((((...((((((......))))))...))))...))))...)))))))((((((----...----.-..))))))... ( -18.50)
>DroPer_CAF1 2223 89 + 1
CACCAACUACCGUGUGGGCUAUCAGAGUCAAUACGAUUUGAUAAUUGUGGAUAACGCUCAAGUUGGUAAGUGUG---CCU----C-CAUCCCUCAGA
.(((((((...((((...((((.(..(((((......)))))..).))))...))))...))))))).......---...----.-........... ( -20.00)
>consensus
CACCAACUACCGUGUGGGCUAUCAAAAUCAAUACGAUUUGAUAAUUGUGGAUAAUGCUCAAGUUGGUAAGUGAA___AUU____A_CAUCCCUCAAA
.(((((((...((((...((((....(((((......)))))....))))...))))...))))))).............................. (-15.20 = -15.07 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:29 2006