Locus 681

Sequence ID 2L_DroMel_CAF1
Location 1,986,531 – 1,986,636
Length 105
Max. P 0.670095
window1113

overview

Window 3

Location 1,986,531 – 1,986,636
Length 105
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 77.45
Mean single sequence MFE -28.83
Consensus MFE -14.86
Energy contribution -14.92
Covariance contribution 0.06
Combinations/Pair 1.13
Mean z-score -1.90
Structure conservation index 0.52
SVM decision value 0.29
SVM RNA-class probability 0.670095
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1986531 105 + 22407834
CUACGUCAGCGAUAACCUCGAUGAUUGUU------UGCUGACGUAGCCGGCUUUCCAAAUCUCCUUCUCAAUAUUCAG-----CAAUAAAUCGUGGAAGUUAUUAAACUUAAUUAA
(((((((((((((((.(.....).))).)------)))))))))))..(((((.(((.........((........))-----..........))))))))............... ( -21.91)
>DroSec_CAF1 1061 104 + 1
CUACGUCAGCGAUAAGCUCGAUGAU-----------GCUGACGUAGCCGGCA-UCCGAUUGUCCUGCUCGAUAUUCAGAGCCGCAAUAAAUCGUGGAAGUUAUCAAACUUAAUUAA
(((((((((((.((.......)).)-----------)))))))))).((((.-((.((.((((......)))).)).)))))).............(((((....)))))...... ( -28.90)
>DroSim_CAF1 2139 109 + 1
CUACGUCAGCGAUAAGCUCGAUGAUUGUU------UGCUGACGUAGCCGGCA-UCAGAUUCUCCUUCUCGAUAUUCAGAGCCCCAAUAAAUCGUGGAAGUUAUCAAACUUAAUUAA
(((((((((((((((.(.....).))).)------)))))))))))..(((.-((.((.((........))...)).)))))(((........)))(((((....)))))...... ( -26.50)
>DroEre_CAF1 1027 108 + 1
CUACGUCAGCGAUAAGGUCGAUGAUUGUG------UGCUGACGUAGCCGGCUUUCCGAGUCUCCUUCUCGAUAUUCAGAGCCGCAAUAAAUCGCGGAAGUUAUCAAACUUAAAU--
((((((((((.(((..(((...)))..))------)))))))))))((((((((..((((.((......)).))))))))))((........))))(((((....)))))....-- ( -33.80)
>DroYak_CAF1 2171 100 + 1
CUACGUCAGCGAUAAGGUCGAUGGCUGUU------UGCUGACGUAGUCGGCUU----------CUUCUCCAUAUUUAGAGCCGCAAUAAAUCGUGCAGGUUAUCAAACUUAAUUAA
((((((((((((...(((.....)))..)------)))))))))))..((((.----------((...........))))))(((........)))(((((....)))))...... ( -31.40)
>DroAna_CAF1 1254 110 + 1
CUACGUCAGUGAUAAGGUCGAUGAUUGUUCGCCACUGCUGACGUAGUCGACCUCCUCGGU------CUCAUUCUAUGGAGCAGUCAUACAUUUUGGAAGCAAUCCAACUUAAUUAA
(((((((((((....((.(((.......)))))..)))))))))))..((((.....)))------)........((((((..(((.......)))..))..)))).......... ( -30.50)
>consensus
CUACGUCAGCGAUAAGCUCGAUGAUUGUU______UGCUGACGUAGCCGGCUUUCCGAGUCUCCUUCUCGAUAUUCAGAGCCGCAAUAAAUCGUGGAAGUUAUCAAACUUAAUUAA
((((((((((..........................))))))))))..................................................(((((....)))))...... (-14.86 = -14.92 +   0.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:45 2006