Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,986,531 – 1,986,636 |
Length | 105 |
Max. P | 0.670095 |
Location | 1,986,531 – 1,986,636 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.45 |
Mean single sequence MFE | -28.83 |
Consensus MFE | -14.86 |
Energy contribution | -14.92 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.13 |
Mean z-score | -1.90 |
Structure conservation index | 0.52 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1986531 105 + 22407834 CUACGUCAGCGAUAACCUCGAUGAUUGUU------UGCUGACGUAGCCGGCUUUCCAAAUCUCCUUCUCAAUAUUCAG-----CAAUAAAUCGUGGAAGUUAUUAAACUUAAUUAA (((((((((((((((.(.....).))).)------)))))))))))..(((((.(((.........((........))-----..........))))))))............... ( -21.91) >DroSec_CAF1 1061 104 + 1 CUACGUCAGCGAUAAGCUCGAUGAU-----------GCUGACGUAGCCGGCA-UCCGAUUGUCCUGCUCGAUAUUCAGAGCCGCAAUAAAUCGUGGAAGUUAUCAAACUUAAUUAA (((((((((((.((.......)).)-----------)))))))))).((((.-((.((.((((......)))).)).)))))).............(((((....)))))...... ( -28.90) >DroSim_CAF1 2139 109 + 1 CUACGUCAGCGAUAAGCUCGAUGAUUGUU------UGCUGACGUAGCCGGCA-UCAGAUUCUCCUUCUCGAUAUUCAGAGCCCCAAUAAAUCGUGGAAGUUAUCAAACUUAAUUAA (((((((((((((((.(.....).))).)------)))))))))))..(((.-((.((.((........))...)).)))))(((........)))(((((....)))))...... ( -26.50) >DroEre_CAF1 1027 108 + 1 CUACGUCAGCGAUAAGGUCGAUGAUUGUG------UGCUGACGUAGCCGGCUUUCCGAGUCUCCUUCUCGAUAUUCAGAGCCGCAAUAAAUCGCGGAAGUUAUCAAACUUAAAU-- ((((((((((.(((..(((...)))..))------)))))))))))((((((((..((((.((......)).))))))))))((........))))(((((....)))))....-- ( -33.80) >DroYak_CAF1 2171 100 + 1 CUACGUCAGCGAUAAGGUCGAUGGCUGUU------UGCUGACGUAGUCGGCUU----------CUUCUCCAUAUUUAGAGCCGCAAUAAAUCGUGCAGGUUAUCAAACUUAAUUAA ((((((((((((...(((.....)))..)------)))))))))))..((((.----------((...........))))))(((........)))(((((....)))))...... ( -31.40) >DroAna_CAF1 1254 110 + 1 CUACGUCAGUGAUAAGGUCGAUGAUUGUUCGCCACUGCUGACGUAGUCGACCUCCUCGGU------CUCAUUCUAUGGAGCAGUCAUACAUUUUGGAAGCAAUCCAACUUAAUUAA (((((((((((....((.(((.......)))))..)))))))))))..((((.....)))------)........((((((..(((.......)))..))..)))).......... ( -30.50) >consensus CUACGUCAGCGAUAAGCUCGAUGAUUGUU______UGCUGACGUAGCCGGCUUUCCGAGUCUCCUUCUCGAUAUUCAGAGCCGCAAUAAAUCGUGGAAGUUAUCAAACUUAAUUAA ((((((((((..........................))))))))))..................................................(((((....)))))...... (-14.86 = -14.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:45 2006