Locus 6809

Sequence ID 2L_DroMel_CAF1
Location 19,032,582 – 19,032,702
Length 120
Max. P 0.931791
window10867

overview

Window 7

Location 19,032,582 – 19,032,702
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -33.96
Consensus MFE -22.03
Energy contribution -22.60
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -2.46
Structure conservation index 0.65
SVM decision value 1.22
SVM RNA-class probability 0.931791
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19032582 120 - 22407834
UAUUGUUUGGCGGGCAGCUGCCUACGGACGUAUGUAUGUGCAUAUGUAUUUACCUGCCACGUAGGGUGGCGUACUAUAUAUGUACGUACCAUCGAGAGCCACACAUCCCCGCCAUAUAUA
...(((.(((((((......((((((...(((.(((.((((....)))).))).)))..))))))(((((((((.......))))(......)....))))).....))))))).))).. ( -43.90)
>DroSim_CAF1 34239 116 - 1
UAUUGUUUGGCGGGCAGCUGCCUACGGACGUA----UGUGCAUAUGUAUUUACCUGCCACGUAGGGUGCCUUACUAUAUAUGUACGUACUAUCGAGAGCCACACAUCCCCGCCAUAUAUA
...(((.(((((((.....((((.(((..(((----((((((((((((....(((((...)))))(((...))))))))))))))))))..))))).))........))))))).))).. ( -39.62)
>DroEre_CAF1 34717 101 - 1
UAUUGUUUGGCCGGCAGCUGCCUACGAGCUUA--------CAUAUUUAUUUACCUGCCACGUAGGGUGCCUUACU------GUAUGUACUAUCGAGACCUACACAUCC-----AAAUAUA
...(((((((..(((....)))..(((...((--------(((((.......(((((...)))))..........------)))))))...)))............))-----))))).. ( -23.43)
>DroYak_CAF1 30870 101 - 1
UAUUGUUUGGCGGGCAGCUGCCUACGGACUUA--------CAUACAUAUUUACCUGCCACGUAGGGUGCCAUACU------GUAUGUACUAUCGAGAGCCACACAUCC-----AUAUAUA
...(((.((((((((....)))).(((...((--------(((((((((...(((((...))))).....))).)------)))))))...)))...)))).)))...-----....... ( -28.90)
>consensus
UAUUGUUUGGCGGGCAGCUGCCUACGGACGUA________CAUAUGUAUUUACCUGCCACGUAGGGUGCCUUACU______GUACGUACUAUCGAGAGCCACACAUCC_____AUAUAUA
...(((.((((.(((((.((..((((..................))))..)).))))).((...((((.(((((.......)))))))))..))...)))).)))............... (-22.03 = -22.60 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:26 2006