Locus 6808

Sequence ID 2L_DroMel_CAF1
Location 19,032,423 – 19,032,542
Length 119
Max. P 0.959193
window10866

overview

Window 6

Location 19,032,423 – 19,032,542
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.64
Mean single sequence MFE -44.60
Consensus MFE -43.60
Energy contribution -43.23
Covariance contribution -0.37
Combinations/Pair 1.06
Mean z-score -2.45
Structure conservation index 0.98
SVM decision value 1.50
SVM RNA-class probability 0.959193
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19032423 119 + 22407834
CCGUGUCCGCUGCUGCUGCUCGGGGCGUUGUUGAAUGUAAAGAGGACGCGCC-CGCUAUUUUUAGCAACACUCACUGCGGCAGCAGUGAAAUUCUUGCGCUUACCAAUUGCUUCUGCUUU
..((((.((((((((((((..((((((((.((.........)).))))).))-)((((....))))..........))))))))))))........)))).........((....))... ( -43.20)
>DroSim_CAF1 34079 120 + 1
CCGUGUCCGCUGCUGCUGCUCGGGGCGUUGUUGAAUGUAAAGAGGACGCGCCACGCUAUUUUUAGCAACACUCACUGCGGCAGCAGCGAAAUUCUUGCGCUUACCAAUUGCUUCUGCUUU
..((((.((((((((((((...(((.(((((((((.(((..(.((.....)).)..))).))))))))).)))...))))))))))))........)))).........((....))... ( -44.70)
>DroEre_CAF1 34560 120 + 1
CCGUGUCCGCUGCUGCUGCUCUGGGCGUUGUUGAAUGUAAAGAGGACGCGCCCCGCUAUUUUUAGCAACACUCACUGCGGCAGCAGCGAAAUUCUUGCGCUUACCAAUUGCUUCUGCUUU
..((((.((((((((((((..((((.(((((((((.(((..(.((......)))..))).))))))))).))))..))))))))))))........)))).........((....))... ( -46.40)
>DroYak_CAF1 30713 120 + 1
CCGUGUCCGCUGUUGCUGCUCGGGGCGUUGUUGAAUGUAAAGAGGACGCGCCCCGCUAUUUUUAGCAACACUCACUGCGGCAGCAGCGAAAUUCUUGCGCUUACCAAUUGCUUCUGCUGU
..((((.((((((((((((..(((((((.(((............))))))))))((((....))))..........))))))))))))........)))).........((....))... ( -44.10)
>consensus
CCGUGUCCGCUGCUGCUGCUCGGGGCGUUGUUGAAUGUAAAGAGGACGCGCCCCGCUAUUUUUAGCAACACUCACUGCGGCAGCAGCGAAAUUCUUGCGCUUACCAAUUGCUUCUGCUUU
..((((.((((((((((((...(((.(((((((((.(((..(.((.....)).)..))).))))))))).)))...))))))))))))........)))).........((....))... (-43.60 = -43.23 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:25 2006