Locus 6807

Sequence ID 2L_DroMel_CAF1
Location 19,030,981 – 19,031,075
Length 94
Max. P 0.818492
window10864 window10865

overview

Window 4

Location 19,030,981 – 19,031,075
Length 94
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 81.27
Mean single sequence MFE -24.75
Consensus MFE -12.74
Energy contribution -15.05
Covariance contribution 2.31
Combinations/Pair 1.07
Mean z-score -2.77
Structure conservation index 0.51
SVM decision value 0.67
SVM RNA-class probability 0.818492
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19030981 94 + 22407834
CUCAAUUUUGCAUAAGUAUAUA--UUUGUAAAAUAUAUACACAUACGUAU--AUAUAUGUGUGCGAUGGCAAAACGGGCGUGAGUGUGAGUGUGUGCU
((((.((((((....(((((((--((.....))))))))).(((.(((((--((....))))))))))))))))...((....)).))))........ ( -26.50)
>DroSim_CAF1 32627 97 + 1
CCC-AUUUUGCAUAAGUAUAUAUGUUUGUAAAAUAUAUAUACACACAUAUGAAUAUAUAUGUGCGAUGGCAAAACGGGCGUGAGUGUGAGUGUGUGCU
(((-.((((((....(((((((((((.....))))))))))).((((((((....)))))))).....)))))).)))....((..(......)..)) ( -27.30)
>DroEre_CAF1 33227 90 + 1
CCCAAUUUUGCAUCAGUAUAU----ACGUAAAAUACAUAUAUACACAUAUUUAUAUAUAUGUGCGAUGUCAAAUCGGGCGUGAGUGUGA----GUGCU
.........((....((((((----(.(((...))).)))))))....((((((((.(((((.((((.....)))).))))).))))))----)))). ( -23.90)
>DroYak_CAF1 29180 91 + 1
CAAAAUUUUGCAUUAGUAUAUAUGUACGUAAAAUAUAUAUACAC---UGUGUAUAUAUAUGUGCGAUGUCAAAACGGGCGAUUGUGUGA----GUGCU
.........(((((..((((..((((((((...(((((((((..---.))))))))))))))))).((((......))))..))))..)----)))). ( -21.30)
>consensus
CCCAAUUUUGCAUAAGUAUAUA__UACGUAAAAUAUAUAUACACACAUAUGUAUAUAUAUGUGCGAUGGCAAAACGGGCGUGAGUGUGA____GUGCU
.........(((((..(((((.....((((..(((((((((((......))))))))))).))))(((((......)))))..)))))....))))). (-12.74 = -15.05 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 19,030,981 – 19,031,075
Length 94
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 81.27
Mean single sequence MFE -20.82
Consensus MFE -8.57
Energy contribution -9.07
Covariance contribution 0.50
Combinations/Pair 1.24
Mean z-score -3.69
Structure conservation index 0.41
SVM decision value 0.39
SVM RNA-class probability 0.715263
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19030981 94 - 22407834
AGCACACACUCACACUCACGCCCGUUUUGCCAUCGCACACAUAUAU--AUACGUAUGUGUAUAUAUUUUACAAA--UAUAUACUUAUGCAAAAUUGAG
..............((((.....(((((((........((((((..--....))))))(((((((((.....))--)))))))....))))))))))) ( -17.60)
>DroSim_CAF1 32627 97 - 1
AGCACACACUCACACUCACGCCCGUUUUGCCAUCGCACAUAUAUAUUCAUAUGUGUGUAUAUAUAUUUUACAAACAUAUAUACUUAUGCAAAAU-GGG
....................((((((((((....((((((((......))))))))((((((((.((.....)).))))))))....)))))))-))) ( -26.30)
>DroEre_CAF1 33227 90 - 1
AGCAC----UCACACUCACGCCCGAUUUGACAUCGCACAUAUAUAUAAAUAUGUGUAUAUAUGUAUUUUACGU----AUAUACUGAUGCAAAAUUGGG
.....----...........((((((((..((((((((((((......))))))))(((((((((...)))))----))))...))))..)))))))) ( -27.60)
>DroYak_CAF1 29180 91 - 1
AGCAC----UCACACAAUCGCCCGUUUUGACAUCGCACAUAUAUAUACACA---GUGUAUAUAUAUUUUACGUACAUAUAUACUAAUGCAAAAUUUUG
.....----..............((((((.(((.....((((((((((...---..)))))))))).....(((......)))..))))))))).... ( -11.80)
>consensus
AGCAC____UCACACUCACGCCCGUUUUGACAUCGCACAUAUAUAUACAUAUGUGUGUAUAUAUAUUUUACAAA__UAUAUACUUAUGCAAAAUUGGG
.(((...............((.............))..((((((((((((....))))))))))))....................)))......... ( -8.57 =  -9.07 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:24 2006