Locus 6806

Sequence ID 2L_DroMel_CAF1
Location 19,026,076 – 19,026,178
Length 102
Max. P 0.692051
window10863

overview

Window 3

Location 19,026,076 – 19,026,178
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 85.69
Mean single sequence MFE -42.15
Consensus MFE -33.34
Energy contribution -34.32
Covariance contribution 0.97
Combinations/Pair 1.10
Mean z-score -2.16
Structure conservation index 0.79
SVM decision value 0.33
SVM RNA-class probability 0.692051
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19026076 102 + 22407834
AAUGGCUACUUCCGGUGCCGGAACGCCAACGGUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUGUCGGAACUGAAGUC
..((((...(((((....))))).))))..((....)).....(((((((((.....))))).)))).(((((((((((((....))))))))))))).... ( -48.70)
>DroSec_CAF1 30135 102 + 1
AAUGGCUACUUCCGGUGCCGGAACGCCAACGAUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUGUCGGAACUGAAGUC
..((((...(((((....))))).))))...............(((((((((.....))))).)))).(((((((((((((....))))))))))))).... ( -47.10)
>DroSim_CAF1 27723 102 + 1
AAUGGCUACUUCCGGUGCCGGAACGCCAACGGUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUGUCGGAACUGAAGUC
..((((...(((((....))))).))))..((....)).....(((((((((.....))))).)))).(((((((((((((....))))))))))))).... ( -48.70)
>DroEre_CAF1 28314 102 + 1
CAUGGCCACUUCCGGUGCCGGAACGCCAACGGUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUCUCGGAACUUAAGUC
....(((......)))((((((((......((....))..((.(((((((((.....))))).)))).)).))))))))((..((....))..))....... ( -42.90)
>DroYak_CAF1 24301 102 + 1
CAUGGCCACUUCCGGUGCCGGAACGCCAACGGUUCACCAAGAGAGACCUGCCUCGGUGGCAGCCUCUGUCAGUUCCGGCGUCUCGAUUUCGGAACUAAAGUC
....(((......)))((((((((......((....))..((.(((.(((((.....)))))..))).)).))))))))((..((....))..))....... ( -37.90)
>DroAna_CAF1 20443 93 + 1
AGU---------CGUGGCCGGCACCCCAUCCACCCAUUCCGAAAGACCCGCCUCGGUGGCAGCCUCGGUCAGCUCGGGAGUCUCUGUGUCCGAGCUUAAAUC
...---------..((((((((.................(....)..((((....))))..)))..)))))(((((((..........)))))))....... ( -27.60)
>consensus
AAUGGCUACUUCCGGUGCCGGAACGCCAACGGUGCACCAAGAGAGACCUGCCUCGGUGGCAGCGUCUGUCAGUUCCGGCGUCUCGAUGUCGGAACUGAAGUC
..((((...(((((....))))).))))............((.(((((((((.....))))).)))).))((((((((.((....)).))))))))...... (-33.34 = -34.32 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:22 2006