| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,023,141 – 19,023,246 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 19,023,141 – 19,023,246 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.00 |
| Mean single sequence MFE | -30.17 |
| Consensus MFE | -28.88 |
| Energy contribution | -28.77 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.96 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19023141 105 + 22407834 AAUGGCGGCACGUCGAUCCGGCUUGUCGCUUGGGCUGCCUGACAUUUGCCGCAGCCAGCGCGCCACCAAUCCCUCAUCCCCUUGCU---------ACACUCAGCCCCCUCCCUC ...(((((((.((((...)))).))))))).((((((..((......(((((.....))).))...........((......))..---------.))..))))))........ ( -29.60) >DroSec_CAF1 27198 105 + 1 AGUGGCGGCACGUCGAUCCGGCUUGUCGCUCGGGCUGCCUGACAUUUGCCGCAGCCAGCGCGCCACCAAUCACCCAACCCCUUGCU---------CCACUCAGCCCCCUCCCUC .(((((((((.((((...)))).))))((.(.((((((............)))))).).))))))).................(((---------......))).......... ( -31.60) >DroSim_CAF1 24792 105 + 1 AGUGGCGGCACGUCGAUCCGGCUUGUCGCUCGGGCUGCCUGACAUUUGCCGCAGCCAGCGCGCCACCAAUCCCCCAUCCCCUUGCU---------CCACUCAGCCCCCUCCCUC .(((((((((.((((...)))).))))((.(.((((((............)))))).).))))))).................(((---------......))).......... ( -31.60) >DroEre_CAF1 25402 110 + 1 AGUGGCGGCACGUCGAUCCGGCUUGUCGCUUGGGCUGCCUGACAUUUGCCGCAGCCAGCGCGCCACCAAUCCCUCCUCCCCUUCCUGCCCUUCCUCCACUCAC----ACUCCUC .(((((((((.((((...)))).))))((...((((((............))))))...))))))).....................................----....... ( -30.10) >DroYak_CAF1 21418 92 + 1 AGUGGCGGCACGUCGAUCCGGCUUGUCGCUUGGGCUGCCUGACAUUUGCCGCAGCCAGCGCGCCACCAAUCCCUCUUCCCCUU------------------AC----CCUCCUC .(((((((((.((((...)))).))))((...((((((............))))))...))))))).................------------------..----....... ( -30.10) >DroAna_CAF1 17430 83 + 1 AGUGGCGGCACGUCGCUCUGGCUUGUCGCUUGGGCUGCCUGACAUUUGCCGCAGCCAGCUAGCCGCCCUUCC-------------UC------------CCAGCCAA------C ((.((((((..((.(((.((((.(((((...((....)))))))...)))).)))..))..))))))))...-------------..------------........------. ( -28.00) >consensus AGUGGCGGCACGUCGAUCCGGCUUGUCGCUUGGGCUGCCUGACAUUUGCCGCAGCCAGCGCGCCACCAAUCCCUCAUCCCCUUGCU_________CCACUCAGCCCCCUCCCUC .(((((((((.((((...)))).))))(((..((((((............)))))))))..)))))................................................ (-28.88 = -28.77 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:21 2006