Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 19,015,616 – 19,015,720 |
Length | 104 |
Max. P | 0.613163 |
Location | 19,015,616 – 19,015,720 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 72.27 |
Mean single sequence MFE | -21.99 |
Consensus MFE | -8.34 |
Energy contribution | -10.58 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.75 |
Structure conservation index | 0.38 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19015616 104 - 22407834 -CGCCGUCUAAAGUCGUUGUCUGACAUCCCCAACCA-CAGGCCCACUUCCUGACCCACCACGCCCCC------UCAUCAGGCGUCAGGCAUCACCCACCAGCUACCACUCAC -.((((.(....).)).((((((((...........-((((.......)))).........(((...------......)))))))))))..........)).......... ( -21.00) >DroSec_CAF1 20178 104 - 1 -CGCCGUCUAAAGUCGUUGUCUGACACCCCCAACCA-CAGGCCCACUUCCUGACCCACCACGCCCCC------UCAUCAGGCGUCAGGCAUCACCCACCAGCUACCAUUCAC -.((((.(....).)).((((((((...........-((((.......)))).........(((...------......)))))))))))..........)).......... ( -21.00) >DroEre_CAF1 19425 93 - 1 -CGCCGUCUAAAGUCGUUGUCUGACACCCCCAACCA-CAGGCCCCCUUCCUGCCCCACCACGCCCCG------UCGUCAGGCGUCAGGCACCACCCACCGA----------- -..............(.((((((((...........-.(((.......)))(((..((.(((...))------).))..))))))))))).).........----------- ( -20.20) >DroWil_CAF1 9945 89 - 1 GUGCGGACUAAAGUCGUUGUCUGACACCCGGACCCAGCAAAUCCGAU-------------CCCCCCC------UCGUCAGCCAACGG-C---CCCGCCCGUCUACCUUUCAA (.((((......(((((((.(((((....(((.........)))((.-------------.......------))))))).))))))-)---.)))).)............. ( -23.50) >DroYak_CAF1 15504 102 - 1 -CGCCGUCUAAAGUCGUUGUCUGACACCCCCAACCA-CAGGCCCACUUCCUGCCCCGCCACACCCCAUCACCAUCAUCAGGCGUCAGGCACCACCCACCAGGCA-------- -.(((.......((.((.(((((((...........-((((.......))))....(((....................)))))))))))).))......))).-------- ( -24.27) >consensus _CGCCGUCUAAAGUCGUUGUCUGACACCCCCAACCA_CAGGCCCACUUCCUGACCCACCACGCCCCC______UCAUCAGGCGUCAGGCACCACCCACCAGCUACC__UCA_ ...............(.((((((((............((((.......)))).........(((...............))))))))))).).................... ( -8.34 = -10.58 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:17 2006