Locus 6801

Sequence ID 2L_DroMel_CAF1
Location 19,012,614 – 19,012,709
Length 95
Max. P 0.624380
window10856

overview

Window 6

Location 19,012,614 – 19,012,709
Length 95
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 87.88
Mean single sequence MFE -20.31
Consensus MFE -15.86
Energy contribution -15.86
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.78
SVM decision value 0.19
SVM RNA-class probability 0.624380
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19012614 95 - 22407834
AUGGCAAUCGCAUUCG------------CACUAACACACACACUCGCUCGCUGACACUAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUACUCC
...((((((((....)------------)...............(((((.(((....................))))))))).)))))((((....))))....... ( -21.15)
>DroSec_CAF1 17258 95 - 1
AUGGCAAUCGCAUUCG------------CACUAACACACACACUCGCUCGCUUACACUAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUACUCC
...(((((.((....)------------)................((.(((((.......................))))))))))))((((....))))....... ( -18.80)
>DroSim_CAF1 13248 95 - 1
AUGGCAAUCGCAUUCG------------CACUAACACACACACUCGCUCGCUUACACUAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUACUCC
...(((((.((....)------------)................((.(((((.......................))))))))))))((((....))))....... ( -18.80)
>DroEre_CAF1 15779 107 - 1
AUGGCAAUCGCAUUCGCAUUCGCAUUCGCAUUGGCACUCACACACACUCGCUUGCACCAACACAAUCGCACCGCAGGAGCGGCAUUGCGGCUAAAAAGCCAUACUCC
(((((....((....))....((....(((..(((..............))))))...........((((((((....))))...))))))......)))))..... ( -25.14)
>DroYak_CAF1 12583 89 - 1
AUGGCAAUCGCAUUCG------------------CACUCACACACACUCGCUUACACCAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUACUCU
...(((((.((....(------------------(..............))...............(((.((...)).))))))))))((((....))))....... ( -17.64)
>consensus
AUGGCAAUCGCAUUCG____________CACUAACACACACACUCGCUCGCUUACACUAACACAAUCGCACCACAGGAGCGGCAUUGCGGCUAAAAAGCCAUACUCC
...(((((.((......................................(....)...........(((.((...)).))))))))))((((....))))....... (-15.86 = -15.86 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:16 2006