Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,986,024 – 1,986,136 |
Length | 112 |
Max. P | 0.610548 |
Location | 1,986,024 – 1,986,136 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.51 |
Mean single sequence MFE | -29.28 |
Consensus MFE | -19.44 |
Energy contribution | -20.38 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.17 |
Mean z-score | -1.28 |
Structure conservation index | 0.66 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1986024 112 - 22407834 UGCAAUGAUUAAUAUAUCAUUAUUAUUCUAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGCCCACCCGAUGCCAUCUUGGGUGUCACGGAAGCCUUCAAGAAGGACACCAA ...((((((......)))))).........((((.....))))...(((((((((..((((....)))).)).)))))))((((((.(....).(((....))))))))).. ( -29.60) >DroGri_CAF1 25235 99 - 1 ----------G---CCUUAUUUUAUUUUCAGAUCCACAUGGUUCUCCGAGGUACAAAUGGGUCCACCGGAUGCCAUUCUGGGUGUUACCGAGGCCUUCAAGAAGGAUCAAAA ----------.---................(((((......((((..(((((...(((((((((...)))).)))))((.((.....)).)))))))..))))))))).... ( -25.00) >DroSec_CAF1 557 112 - 1 UGCAAAGAAUAAUAUAUUAUUAUUAUUCCAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGUCCACCCGAUGCCAUCUUGGGCGUCACGGAAGCCUUCAAGAAGGACACCAA ......((((((((......))))))))..........((((..((((..........(((....)))((((((......)))))).)))).(((((....)))).))))). ( -32.60) >DroEre_CAF1 556 110 - 1 UACAAAUAUUAA-A-AGUAUUAUCAUUUUAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGUCCACCCGAUGCCAUCCUGGGCGUUACGGAGGCCUUCAAGAAGGACACCAA ....(((((...-.-.))))).................((((((((((..........(((....)))((((((......)))))).))))))((((....))))..)))). ( -27.70) >DroYak_CAF1 1666 111 - 1 UGAAAAUAUUAA-AUAACAUUAUUAUUUCAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGUCCACCCGAUGCCAUCUUGGGCGUUACGGAGGCCUUUAAGAAGGACACCAA (((((.((.(((-......))).)))))))........((((((((((..........(((....)))((((((......)))))).))))))((((....))))..)))). ( -27.90) >DroAna_CAF1 630 109 - 1 UCCAAU--UUAAAACCCCAAUG-UCUUUCAGCUCAUCGUGGUUCACUGAAACGAAAAUGGGUCCUCCCGACGCCAUUUUGGGUGUUACGGAGGCCUUCAAGAAGGACAAAAA ......--............((-((((((.((((((..(.(((......))).)..))))))(((((.((((((......))))))..))))).......)))))))).... ( -32.90) >consensus UGCAAA_AUUAA_AUAUCAUUAUUAUUUCAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGUCCACCCGAUGCCAUCUUGGGCGUUACGGAGGCCUUCAAGAAGGACACCAA ......................................((((((((((..........(((....)))((((((......)))))).))))))((((....))))..)))). (-19.44 = -20.38 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:44 2006