Locus 6798

Sequence ID 2L_DroMel_CAF1
Location 19,005,676 – 19,005,788
Length 112
Max. P 0.965888
window10851

overview

Window 1

Location 19,005,676 – 19,005,788
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 90.34
Mean single sequence MFE -37.34
Consensus MFE -35.22
Energy contribution -34.14
Covariance contribution -1.08
Combinations/Pair 1.20
Mean z-score -1.57
Structure conservation index 0.94
SVM decision value 1.59
SVM RNA-class probability 0.965888
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19005676 112 + 22407834
AUUGGAAGAGACCCAGUUGCUUUGUGACGGCUCACAACCCCGGAUUGCUGUGUCAAGCUUUUACGUCGAAUUAUUGAAUAAAUAGUUCCGCACGGCGAACGGGUCGGCAACG
..(((.......)))((((((((((((....)))))).((((..(((((((((..((((......((((....))))......))))..))))))))).))))..)))))). ( -38.80)
>DroSec_CAF1 8646 112 + 1
UUUGGAUGAGAGCCAGUUGCUUUGUGACGGCACACAACCCCGGCUUGCCGUGUCAAGCUUUUACGUCGAAUUAUUAAAUAAAUAGUUCCGCACGGCGAACGGGUCGGCAACG
..(((.(....))))(((((((((((......))))).((((..(((((((((...((......)).((((((((.....)))))))).))))))))).))))..)))))). ( -38.80)
>DroSim_CAF1 7005 112 + 1
UUUGGAAGAGAGCCAGUUGCUUUGUGACGGCACACAACCCCGGCUUGCCGUGUCAAGCUUUUACGUCGAAUUAUUGAAUAAAUAGUUCCGCACGGCGAACGGGUCGGCAACG
..(((.......)))(((((((((((......))))).((((..(((((((((..((((......((((....))))......))))..))))))))).))))..)))))). ( -39.90)
>DroEre_CAF1 8809 110 + 1
UUUGGAGGAGAUUCAGUUGCUCUGUGAGUG--CACAACCCUGGAUUGUCGUGUCAAGCUUUUACGUCGAAUUAUUGAAUAAAUAGUUCCGCACGGCGAACGGGUCCGCAACG
..((((.....))))(((((..((((....--))))..((((..(((((((((..((((......((((....))))......))))..))))))))).))))...))))). ( -33.00)
>DroYak_CAF1 5844 110 + 1
UUUGGAGGAGAUUCGGUUGCUCUGUGAGUG--AACAACCCUGGAUCGCCGUGUCAAGCUCUUACGCCGAAUUAUUGAAUAAAUAGUUCCGCACGGCGAACGGGUCCGCAACG
.(((..(((.....(((((.((.......)--).)))))(((..(((((((((...((......)).((((((((.....)))))))).))))))))).))).))).))).. ( -36.20)
>consensus
UUUGGAAGAGAGCCAGUUGCUUUGUGACGGC_CACAACCCCGGAUUGCCGUGUCAAGCUUUUACGUCGAAUUAUUGAAUAAAUAGUUCCGCACGGCGAACGGGUCGGCAACG
..(((.......)))(((((..((((......))))..((((..(((((((((...((......)).((((((((.....)))))))).))))))))).))))...))))). (-35.22 = -34.14 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:11 2006