Locus 6797

Sequence ID 2L_DroMel_CAF1
Location 19,005,506 – 19,005,596
Length 90
Max. P 0.833435
window10850

overview

Window 0

Location 19,005,506 – 19,005,596
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -19.87
Consensus MFE -17.81
Energy contribution -17.60
Covariance contribution -0.21
Combinations/Pair 1.15
Mean z-score -1.82
Structure conservation index 0.90
SVM decision value 0.72
SVM RNA-class probability 0.833435
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19005506 90 - 22407834
ACAUGCUAUAGUUCAACACUUUGGGUGCUUGGCCAACAUUUAAAGGUUCAAAGAGCUAAAGCAUAGAAUCAUAUUAAGAUUGUUGGCAUU
..(((((.(((((((((.(((((((((.((....))))))))))))))....)))))).)))))..((((.......))))......... ( -19.80)
>DroSec_CAF1 8482 84 - 1
AAAUG------UUCAGCACUUUGUGUGCUUGGCCAACAUUUAAAGGUUCAAAAAGCUUAAGUUUAGAAUCAUCUUAAGAUUGUUGGCAUU
.....------...(((((.....)))))..(((((((......(((((...((((....)))).)))))(((....))))))))))... ( -21.80)
>DroSim_CAF1 6835 90 - 1
AAAUGAUUUAGUUCAACAAUUUGUGUGCUUGGCCAACACUUAAAGGUUCAAAAAGCUAAAGUUUAGAAUCAUCUUAAGAUUGUUGGCACU
.........(((...((.....))..)))..((((((((((((.(((((...((((....)))).)))))...)))))..)))))))... ( -18.00)
>consensus
AAAUG_U_UAGUUCAACACUUUGUGUGCUUGGCCAACAUUUAAAGGUUCAAAAAGCUAAAGUUUAGAAUCAUCUUAAGAUUGUUGGCAUU
.............((((((.....))).)))((((((((((((.(((((...((((....)))).)))))...)))))..)))))))... (-17.81 = -17.60 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:10 2006