Locus 6791

Sequence ID 2L_DroMel_CAF1
Location 18,997,836 – 18,997,956
Length 120
Max. P 0.966363
window10837 window10838

overview

Window 7

Location 18,997,836 – 18,997,956
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -53.17
Consensus MFE -47.45
Energy contribution -48.23
Covariance contribution 0.79
Combinations/Pair 1.10
Mean z-score -3.01
Structure conservation index 0.89
SVM decision value 1.59
SVM RNA-class probability 0.966363
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18997836 120 + 22407834
GACAGGCUGUGGUGCGCGCUGGAGGAGGUGGAACUCAAGGAUGUGGUGGCCAGUGUGGCCACUGGCCUGGAGACCAAAAUCACAGAGGGUGGCUCCAACUUUAGCGUGGGCCAGCGCCAA
....(((..((((.((((((((((..((.(..((((.....((((((((((((((....)))))))).(....)....))))))..))))..).))..)))))))))).))))..))).. ( -58.80)
>DroSim_CAF1 13920 120 + 1
GAAAGACUGUGGUGCGCGUUGGAGGAGGUGGAACUCAAGGAUGUGGUGGCCAGUGUGGCCACUGGCCUGGAGACCAAAAUCACCGAGGGUGGUUCCAACUUUAGCGUGGGCCAGCGCCAA
.........((((.((((((((((..(((((..(((.(((...((((((((.....)))))))).))).))).))).(((((((...)))))))))..)))))))))).))))....... ( -51.30)
>DroYak_CAF1 14356 120 + 1
GAAAAGCUGUGGUGCGCGCUGGAGGAGGUGGAGCUCAAGGAUGUGGUGUCCAGCGUGGCCACUGGCCUGGAGACGAAAAUCACCGAAGGUGGCUCCAACUUCAGCGUAGGUCAGCGCCAA
.........(((((((((((((((....((((((...........((.((((....((((...)))))))).))......((((...)))))))))).)))))))))......)))))). ( -49.40)
>consensus
GAAAGGCUGUGGUGCGCGCUGGAGGAGGUGGAACUCAAGGAUGUGGUGGCCAGUGUGGCCACUGGCCUGGAGACCAAAAUCACCGAGGGUGGCUCCAACUUUAGCGUGGGCCAGCGCCAA
....(((..((((.((((((((((....((((((((.(((...((((((((.....)))))))).))).))).......((((.....))))))))).)))))))))).))))..))).. (-47.45 = -48.23 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 18,997,836 – 18,997,956
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -41.63
Consensus MFE -35.72
Energy contribution -36.17
Covariance contribution 0.45
Combinations/Pair 1.12
Mean z-score -2.45
Structure conservation index 0.86
SVM decision value 0.78
SVM RNA-class probability 0.848639
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18997836 120 - 22407834
UUGGCGCUGGCCCACGCUAAAGUUGGAGCCACCCUCUGUGAUUUUGGUCUCCAGGCCAGUGGCCACACUGGCCACCACAUCCUUGAGUUCCACCUCCUCCAGCGCGCACCACAGCCUGUC
..(((..(((..(.((((..((.((((((((.....((((....(((((....)))))((((((.....))))))))))....)).)))))).)).....)))).)..)))..))).... ( -43.70)
>DroSim_CAF1 13920 120 - 1
UUGGCGCUGGCCCACGCUAAAGUUGGAACCACCCUCGGUGAUUUUGGUCUCCAGGCCAGUGGCCACACUGGCCACCACAUCCUUGAGUUCCACCUCCUCCAACGCGCACCACAGUCUUUC
...((((((((....))))..((((((..((((...))))....(((.(((.(((...((((((.....)))))).....))).)))..))).....))))))))))............. ( -42.30)
>DroYak_CAF1 14356 120 - 1
UUGGCGCUGACCUACGCUGAAGUUGGAGCCACCUUCGGUGAUUUUCGUCUCCAGGCCAGUGGCCACGCUGGACACCACAUCCUUGAGCUCCACCUCCUCCAGCGCGCACCACAGCUUUUC
...((((((.....((((((((.((....)).))))))))......(.(((.(((((((((....)))))).........))).))))...........))))))((......))..... ( -38.90)
>consensus
UUGGCGCUGGCCCACGCUAAAGUUGGAGCCACCCUCGGUGAUUUUGGUCUCCAGGCCAGUGGCCACACUGGCCACCACAUCCUUGAGUUCCACCUCCUCCAGCGCGCACCACAGCCUUUC
...(((((((...((......))((((((((.....((.(((....))).)).((((((((....))))))))..........)).))))))......)))))))((......))..... (-35.72 = -36.17 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:59 2006