Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,982,659 – 1,982,779 |
Length | 120 |
Max. P | 0.548570 |
Location | 1,982,659 – 1,982,779 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.94 |
Mean single sequence MFE | -41.43 |
Consensus MFE | -24.85 |
Energy contribution | -22.72 |
Covariance contribution | -2.13 |
Combinations/Pair | 1.55 |
Mean z-score | -1.45 |
Structure conservation index | 0.60 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1982659 120 + 22407834 UUCACGCCCUACGUCGGCAACGGCUACCUGGGCCUGGAGAUCGCACACGACGCUUUCCUGAACAUCAAGAAUGGCAGGGCCAUGCAGCUGCCUAUUCCUUUCCAGCCGGUGGUCUCCGUU .....((((...((((....)))).....))))..(((((((((.((.((.....)).))........(((((((((.((...))..))))).))))...........)))))))))... ( -41.10) >DroPse_CAF1 32141 120 + 1 UUCACGCCAUAUAUUGGCAACGGUUACAUCGGUUUGGAGAUAGCCCACGAUGCGUCGCUGAACAUCAAGCACGGUCGUGCCAUGCAACUGCCCAUCCGUUUUCAGCCGAUUGUGUCCGUG .....((((.....)))).((((.((((((((((.((((((....((((((.(((.(((........))))))))))))....((....))......)))))))))))).)))).)))). ( -41.20) >DroYak_CAF1 8424 120 + 1 UUCACGCCCUACGUGGGCAACGGCUAUCUGGGGCUGGAGAUCACACACGACGCCUAUCUGAACAUCAAGAAUGGCAGGGCCAUGCAGCUGCCCAUUCGCUUCCAGCCGGUGGUCUCCGUU .....((((((.((((.(...).)))).)))))).(((((((((....((.(((..(((........)))..))).((((.........))))..))((.....))..)))))))))... ( -43.70) >DroAna_CAF1 12180 120 + 1 AUCACACCCUAUGUGGGUAAUGGCUAUCUGGGUCUGGAGAUAGCCCAUGAUGCCUUCCUGAACAUCAAGCACGGCCGGGCCAUGCAGCUGCCCAUUCGCUUCCAGCCGGUGGUUUCUGUU ....((((....(((((((..(((.(((((((.(((....))))))).))))))..............(((.(((...))).)))...)))))))..((.....)).))))......... ( -37.70) >DroMoj_CAF1 22453 120 + 1 UACACGCCCUAUGUCGGUAACGGUUAUAUUGGCAUGGAGGUGUCGCAUGGUGCGUCACUGAAUAUAAAACAUGGACGCGCCAUGCAGCUACCCAUACGCUUCUAUCCAUUAUUGUCCGUC .....(((.......))).((((..(((.(((.((((((((((.((((((((((((..((.........))..)))))))))))).(.....)..))))))))))))).)))...)))). ( -43.70) >DroPer_CAF1 25101 120 + 1 UUCACGCCAUAUAUUGGCAACGGCUACAUCGGUUUGGAGAUAGCCCACGAUGCGUCGCUGAACAUCAAGCACGGUCGUGCCAUGCAACUGCCCAUCCGUUUUCAGCCGAUUGUGUCCGUG .....((((.....)))).((((.((((((((((.((((((....((((((.(((.(((........))))))))))))....((....))......)))))))))))).)))).)))). ( -41.20) >consensus UUCACGCCCUAUGUCGGCAACGGCUACAUGGGUCUGGAGAUAGCCCACGAUGCGUCCCUGAACAUCAAGCACGGCCGGGCCAUGCAGCUGCCCAUUCGCUUCCAGCCGGUGGUGUCCGUU .....((((.....)))).((((..(((..((.((((((((..........((((..(((..(.....)..)))..))))...((....))......))))))))))...)))..)))). (-24.85 = -22.72 + -2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:43 2006