Locus 6789

Sequence ID 2L_DroMel_CAF1
Location 18,978,403 – 18,978,494
Length 91
Max. P 0.951487
window10834

overview

Window 4

Location 18,978,403 – 18,978,494
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 87.65
Mean single sequence MFE -29.08
Consensus MFE -26.22
Energy contribution -26.34
Covariance contribution 0.12
Combinations/Pair 1.17
Mean z-score -1.79
Structure conservation index 0.90
SVM decision value 1.41
SVM RNA-class probability 0.951487
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18978403 91 - 22407834
CCGCCUCGCGUCCAUCGACGCUUCAUUGUGCGUAUUGUGAUUGCAUUUUAUGCGAUUUUGUGCGGUUGCGGCACAAGUUUGGGCACUAAAC
..((((.(((((....)))))....((((((....((..(((((((.............)))))))..))))))))....))))....... ( -29.92)
>DroSec_CAF1 11036 88 - 1
CCGCCUCGCGUCCAUCGACGCUUCAUUGUGCGCAUUGUGAUUGCAUUUUAUGCGAUC---UGCGGUUGCGGCACAAGUUUGGGCACUAGCC
..((((.(((((....)))))....(((((((((((((((((((((...))))))))---.)))).))).))))))....))))....... ( -34.80)
>DroSim_CAF1 11031 88 - 1
CCGCCUCGCGUCCAUCGACGCUUCAUUGUGCGCAUUGUGAUUGCAUUUUAUGCGAUC---UGCGGUUGCGGCACAAGUUUGGACACUUAAC
((.....(((((....)))))....(((((((((((((((((((((...))))))))---.)))).))).))))))....))......... ( -30.30)
>DroEre_CAF1 11067 85 - 1
---CCUCGUGUCCAUCGGCGCUUCAUUGUGCGCAUUGUGAUUACAAUUUAUGCGAUC---UGCGGUGGCGACACAAGUUUGGGCACAAAAU
---....(((((((.((((((........)))).....(((..((.....))..)))---..))(((....))).....)))))))..... ( -26.10)
>DroYak_CAF1 10828 87 - 1
-CGCCUUGUGUUCAUCGACGCUUCAUUGUGCGCAUUGUGAUUACAGUUUAUGCUAUC---UGCGGUUGCGGCACAAGUUCGGGCACGAAAU
-.((((.(((((....)))))....((((((((((((((((..((.....))..)))---.)))).))).))))))....))))....... ( -24.30)
>consensus
CCGCCUCGCGUCCAUCGACGCUUCAUUGUGCGCAUUGUGAUUGCAUUUUAUGCGAUC___UGCGGUUGCGGCACAAGUUUGGGCACUAAAC
..((((.(((((....)))))....((((((((((((((((((((.....)))))))....))))).))).)))))....))))....... (-26.22 = -26.34 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:55 2006