Locus 6788

Sequence ID 2L_DroMel_CAF1
Location 18,974,001 – 18,974,117
Length 116
Max. P 0.897290
window10833

overview

Window 3

Location 18,974,001 – 18,974,117
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.25
Mean single sequence MFE -23.34
Consensus MFE -19.05
Energy contribution -20.53
Covariance contribution 1.48
Combinations/Pair 1.06
Mean z-score -1.78
Structure conservation index 0.82
SVM decision value 1.00
SVM RNA-class probability 0.897290
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18974001 116 - 22407834
UGCUGGCAAAAACAUCUUGGGAAUUGAAUGUUAUCUUUGACUAA----UGUUUGUUUUGGAUCUUUGAAGUACCCAUCACAACUUAUCAAGUAACAAAAUAUAACGUUCAAUUUCUAAUA
................((((((((((((((((((.(((.(((.(----((.((((..(((..((....))...)))..))))..)))..)))....))).)))))))))))))))))).. ( -25.30)
>DroSec_CAF1 6684 120 - 1
UGCUGGCAAAAACAUCUUGGGAAUUGAAUGUUAUCUUUGACUAAUGAAUGUUUGUUUUGGAUCUUUGAAGUACCCAUAACAACUUAUCAAGUAACCAAAUAUAAUGUCCAAUUUCUAAAA
................((((((((((.(((((((.(((((((..(((....(((((.(((..((....))...))).)))))....))))))...)))).))))))).)))))))))).. ( -21.90)
>DroSim_CAF1 6679 120 - 1
UGCUGGCAAAAACAUCUUGGGAAUUGAAUGUUAUCUUUGACUAAUGAAUGUUUGUUUUGGAUCUUUGAAGUACCCAUAACAACUUAUCAAGUAACCAAAUAUAAUGUCCAAUUUCUAAAA
................((((((((((.(((((((.(((((((..(((....(((((.(((..((....))...))).)))))....))))))...)))).))))))).)))))))))).. ( -21.90)
>DroEre_CAF1 6707 120 - 1
UGCUGGCAAAAACAUCUUGGGAAUUGAAUGUUAUCUUUGACAAACGAAAAUACGUUCUGGCUCUUUAAAGUACCCAUAACAAAUUAUCAAGUAUCCAAACAUAAUGUUCAAUUUCUAAAA
................((((((((((((((((((.((((......((.(((..(((.(((..((....))...))).)))..))).)).......)))).)))))))))))))))))).. ( -22.52)
>DroYak_CAF1 6448 120 - 1
UGCUGGCAAAAACAUCUCGGAAAUUGAAUGUUAUCUUUGACAAACGAAAUUAUGUUUUGGCUCUUUGAAGUUCACAUAACAACUUAUCAAGUAUCCAAACAUAAUGUUCAAUUUCUAAAA
..................(((((((((((((((....)))).......(((((((((.((..(((..(((((........)))))...)))...)))))))))))))))))))))).... ( -25.10)
>consensus
UGCUGGCAAAAACAUCUUGGGAAUUGAAUGUUAUCUUUGACUAACGAAUGUUUGUUUUGGAUCUUUGAAGUACCCAUAACAACUUAUCAAGUAACCAAAUAUAAUGUUCAAUUUCUAAAA
................((((((((((((((((((.((((............(((((.(((..((....))...))).))))).............)))).)))))))))))))))))).. (-19.05 = -20.53 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:55 2006