Locus 6786

Sequence ID 2L_DroMel_CAF1
Location 18,963,538 – 18,963,628
Length 90
Max. P 0.792350
window10830

overview

Window 0

Location 18,963,538 – 18,963,628
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 78.93
Mean single sequence MFE -22.98
Consensus MFE -16.64
Energy contribution -17.52
Covariance contribution 0.88
Combinations/Pair 1.12
Mean z-score -1.67
Structure conservation index 0.72
SVM decision value 0.59
SVM RNA-class probability 0.792350
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18963538 90 - 22407834
AACCAGAAAUGCCAGCAUUUCUAUUGUGACAAAUGGGUGUCCGCGUUAGAGAAACCCGACUGUACAAACACAGUUACGGUUCUGGUUGGU
(((((((...(((....((((((.(((((((......))).)))).)))))).....((((((......))))))..))))))))))... ( -27.20)
>DroSec_CAF1 18569 72 - 1
AACCAGAAAUGCCUGCAUUUCUAUUGUGACAUAU-------UGCGUUAGAGAAACACGAC-----------GGUUACGGUUCUGGUUGGU
(((((((((((....)))))))((((((((...(-------((.(((.....))).))).-----------.))))))))...))))... ( -19.50)
>DroSim_CAF1 18117 72 - 1
AACCAGAAAUGCCAGCAUUUCUAUUGUGACAUAU-------UGCGUUAGAGAAACACGAC-----------GGUUACGGUUCUGGUUGGU
(((((((((((....)))))))((((((((...(-------((.(((.....))).))).-----------.))))))))...))))... ( -19.50)
>DroEre_CAF1 26316 90 - 1
AUCUAGUAAUACCAGCACUUCUAUUGUGACAAAUGGCUGACCGCGUUAGAGAAACUCGACUGUACAAAGACAGUUACGGUUCUGGUUGGU
..........((((((....(((((......)))))..(((((.....(((...)))((((((......)))))).)))))...)))))) ( -20.70)
>DroYak_CAF1 18507 88 - 1
AACCAGAAGCCCCAGCCUUUCUAUUGUGACAAUUG--UGUCCGCGUUAGAGAAACCCGACUGUAAAAAUACAGUUACGGUUCUGGUUGGU
((((((((.((......((((((.(((((((....--))).)))).)))))).....(((((((....)))))))..))))))))))... ( -28.00)
>consensus
AACCAGAAAUGCCAGCAUUUCUAUUGUGACAAAUG__UG_CCGCGUUAGAGAAACACGACUGUA_AAA_ACAGUUACGGUUCUGGUUGGU
(((((((...(((....((((((.((((.............)))).)))))).....((((((......))))))..))))))))))... (-16.64 = -17.52 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:52 2006