Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,956,449 – 18,956,566 |
Length | 117 |
Max. P | 0.663689 |
Location | 18,956,449 – 18,956,566 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -45.08 |
Consensus MFE | -31.94 |
Energy contribution | -34.17 |
Covariance contribution | 2.23 |
Combinations/Pair | 1.26 |
Mean z-score | -1.23 |
Structure conservation index | 0.71 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18956449 117 + 22407834 AUAAGCGAGGUCUUCUCUUCGCUGGAAACCUCCAGGGUGGGGGAGAGCAUCCACUUGGAUGAGUUGGAAGA---GGUGGCGGUGUUUGCUCCUCCCGCUACCAAGCCGAUAGGCGUGGCC ...((((.(.((((((((.(.(((((....))))).).)))))))).).(((((((....))).)))).((---((.((((.....)))))))).)))).(((.(((....))).))).. ( -47.70) >DroGri_CAF1 13536 104 + 1 AUCAGCGAAGUCUUAUCCUC---------CUCCAGUGUGGGCGAUAGCAGCCACUUGGAUGAGCUGGAUGA---GACCAUUGGAUUGCCGCCGCCAGC---UGUGGCAAUCGGCGUAAC- ....((...(((((((((((---------.(((((.((((((....))..))))))))).))...))))))---))).....(((((((((.(....)---.))))))))).)).....- ( -43.50) >DroSim_CAF1 11034 117 + 1 AUAAGCGAGGUCUUCUCUUCGCUGGAAACCUCCAGGGUGGGGGAGAGCAUCCACUUGGAUGAGUUGGAUGA---GGUGGCGGUGUUUGCUCCUCCCGCUACCAAGCCGAUAGGCGUGGCC ...((((.(.((((((((.(.(((((....))))).).)))))))).)((((((((....))).)))))((---((.((((.....)))))))).)))).(((.(((....))).))).. ( -48.50) >DroEre_CAF1 19052 117 + 1 AUAAGCGAAGUCUUCUCUUCGCUGGAAACCUCUAGGGUGGGGGAGAGCAUCCACUUGGAUGAGUUGGAUGA---GGUGGCGGUGUUUGCUCCUCCCGCCACCAAGCCGAUAGGCGUGGCC ....((....((((((((.(.(((((....))))).).)))))))).(((((((((....))).)))))).---((((((((.(.........)))))))))..(((....)))...)). ( -48.20) >DroYak_CAF1 11421 117 + 1 AUAAGCGAGGUUUUCUCUUCGCUGGAAACCUCCAAAGUGGGCGAGAGCAUCCACUUGGAUGAGUUGGAUGA---GGUGGCGGUGUUUGCUCCUCCCGUUACCAAGCCGAUAGGCGUGGCC ...(((((((......)))))))((.(((((((((.((((((....))..))))))))).).)))....((---((.((((.....))))))))))....(((.(((....))).))).. ( -42.70) >DroAna_CAF1 13670 111 + 1 AUCAGAGAGGUCUUCUCCUCGCUGGACACCUCCAGGGUGGGGGAGAGCAGCCACUUGGACGAGUUGGAUGAAUGGGGCGCAGUGCUG---------GCUACCGAGCUGAGGGGCGUGACC .(((....(.((((((((.(.(((((....))))).).)))))))).).(((.((..(...(((..(.....((.....))...)..---------)))......)..)).))).))).. ( -39.90) >consensus AUAAGCGAGGUCUUCUCUUCGCUGGAAACCUCCAGGGUGGGGGAGAGCAUCCACUUGGAUGAGUUGGAUGA___GGUGGCGGUGUUUGCUCCUCCCGCUACCAAGCCGAUAGGCGUGGCC ..........((((((((.(.(((((....))))).).)))))))).(((((((((....))).))))))....((((((((............))))))))..(((....)))...... (-31.94 = -34.17 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:49 2006